RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 PDPK1O15530 556 aa9.42□□□□□ -0.9
YBX3-210ENST00000540975 KRT1P04264 644 aa9.42□□□□□ -0.9
YBX3-210ENST00000540975 TMEM253P0C7T8 217 aa9.42□□□□□ -0.9
YBX3-210ENST00000540975 KCNJ6P48051 423 aa9.42□□□□□ -0.9
YBX3-210ENST00000540975 GFRA1P56159 465 aa9.42□□□□□ -0.9
YBX3-210ENST00000540975 CBX2Q14781 532 aaPredicted RBP9.42□□□□□ -0.9
YBX3-210ENST00000540975 TMEM132EQ6IEE7 984 aa9.42□□□□□ -0.9
YBX3-210ENST00000540975 IQCEQ6IPM2 695 aa9.42□□□□□ -0.9
YBX3-210ENST00000540975 KRTAP4-12Q9BQ66 201 aa9.42□□□□□ -0.9
YBX3-210ENST00000540975 KRTAP9-6A0A140TA67 174 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 TEX51A0A1B0GUA7 166 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 IQCA1LA6NCM1 817 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 ETV2O00321 342 aaPredicted RBP9.41□□□□□ -0.9
YBX3-210ENST00000540975 ABLIM1O14639 778 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 NPHS1O60500 1241 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 VIPR1P32241 457 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 SRSF3P84103 164 aaKnown RBP9.41□□□□□ -0.9
YBX3-210ENST00000540975 HSP90AA2PQ14568 343 aaPredicted RBP9.41□□□□□ -0.9
YBX3-210ENST00000540975 RAB3GAP1Q15042 981 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 INF2Q27J81 1249 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 PRSS53Q2L4Q9 553 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 MBLAC2Q68D91 279 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 BICRALQ6AI39 1079 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 ZNF669Q96BR6 464 aaPredicted RBP9.41□□□□□ -0.9
YBX3-210ENST00000540975 PPP1R16BQ96T49 567 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 GULP1Q9UBP9 304 aa9.41□□□□□ -0.9
YBX3-210ENST00000540975 TMEFF2Q9UIK5 374 aaPredicted RBP9.41□□□□□ -0.9
YBX3-210ENST00000540975 NUDT19A8MXV4 375 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 C1QTNF9P0C862 333 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 TACR1P25103 407 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 SERINC3Q13530 473 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 NR1I3Q14994 352 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 PKN1Q16512 942 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 SOGA3Q5TF21 947 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 E4F1Q66K89 784 aaPredicted RBP9.4□□□□□ -0.9
YBX3-210ENST00000540975 DENND5AQ6IQ26 1287 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 CCDC103Q8IW40 242 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 LZTR1Q8N653 840 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 TMEM145Q8NBT3 493 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 SREK1Q8WXA9 508 aaKnown RBP9.4□□□□□ -0.9
YBX3-210ENST00000540975 MTA3Q9BTC8 594 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 RWDD3Q9Y3V2 267 aa9.4□□□□□ -0.9
YBX3-210ENST00000540975 CCDC85CA6NKD9 419 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 CYBBP04839 570 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 DBHP09172 617 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 RASGRF1Q13972 1273 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 PAQR3Q6TCH7 311 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 RPTNQ6XPR3 784 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 SPATC1Q76KD6 591 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 KRTAP19-1Q8IUB9 90 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 DPF3Q92784 378 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 SGPP1Q9BX95 441 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 SIRT5Q9NXA8 310 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 FBLN5Q9UBX5 448 aa9.39□□□□□ -0.91
YBX3-210ENST00000540975 NFIBO00712 420 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 SEMA7AO75326 666 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 TSPAN15O95858 294 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 GLDCP23378 1020 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 RAP1GAPP47736 663 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 DLG4P78352 724 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 TMEM62Q0P6H9 643 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 SLC35F1Q5T1Q4 408 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 ATG14Q6ZNE5 492 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 USP33Q8TEY7 942 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 DIO2Q92813 273 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 C1orf159Q96HA4 380 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 IER2Q9BTL4 223 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 GCM1Q9NP62 436 aa9.38□□□□□ -0.91
YBX3-210ENST00000540975 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.38□□□□□ -0.91
YBX3-210ENST00000540975 MEFVO15553 781 aaPredicted RBP9.37□□□□□ -0.91
YBX3-210ENST00000540975 SRGAP3O43295 1099 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 DLX3O60479 287 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 MED14OSP0DP75 135 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 GLI4P10075 376 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 YBX3P16989 372 aaKnown RBP eCLIP9.37□□□□□ -0.912e-6■■□□□ 11.5
YBX3-210ENST00000540975 TESK1Q15569 626 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 ACBD5Q5T8D3 534 aaPredicted RBP9.37□□□□□ -0.91
YBX3-210ENST00000540975 OLFML2BQ68BL8 750 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 LRRC47Q8N1G4 583 aaKnown RBP9.37□□□□□ -0.91
YBX3-210ENST00000540975 PLEKHO2Q8TD55 490 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 KCTD13Q8WZ19 329 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 AARSD1Q9BTE6 412 aaKnown RBP9.37□□□□□ -0.91
YBX3-210ENST00000540975 CNTD2Q9H8S5 307 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 ARHGEF4Q9NR80 690 aa9.37□□□□□ -0.91
YBX3-210ENST00000540975 MBD1Q9UIS9 605 aaPredicted RBP9.37□□□□□ -0.91
YBX3-210ENST00000540975 F8W031 263 aaPredicted RBP9.36□□□□□ -0.91
YBX3-210ENST00000540975 FUCA1P04066 466 aa9.36□□□□□ -0.91
YBX3-210ENST00000540975 MAPKAPK2P49137 400 aa9.36□□□□□ -0.91
YBX3-210ENST00000540975 MAP4K2Q12851 820 aa9.36□□□□□ -0.91
YBX3-210ENST00000540975 LRP10Q7Z4F1 713 aa9.36□□□□□ -0.91
YBX3-210ENST00000540975 PPIL6Q8IXY8 311 aa9.36□□□□□ -0.91
YBX3-210ENST00000540975 PMFBP1Q8TBY8 1022 aa9.36□□□□□ -0.91
YBX3-210ENST00000540975 SPATA9Q9BWV2 254 aa9.36□□□□□ -0.91
YBX3-210ENST00000540975 TIMM13Q9Y5L4 95 aaPredicted RBP9.36□□□□□ -0.91
YBX3-210ENST00000540975 ZC3H12DA2A288 527 aaKnown RBP9.35□□□□□ -0.91
YBX3-210ENST00000540975 FAM221BA6H8Z2 402 aa9.35□□□□□ -0.91
YBX3-210ENST00000540975 FGFR1P11362 822 aa9.35□□□□□ -0.91
YBX3-210ENST00000540975 MTERF2Q49AM1 385 aa9.35□□□□□ -0.91
YBX3-210ENST00000540975 RCBTB1Q8NDN9 531 aa9.35□□□□□ -0.91
YBX3-210ENST00000540975 SMG5Q9UPR3 1016 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms