RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, human

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-225	ENST00000540756	PARP14	Q460N5	1801 aa		27.84	■■■□□ 2.05
TTC3-225	ENST00000540756	ZC3H4	Q9UPT8	1303 aa	Known RBP	27.84	■■■□□ 2.05
TTC3-225	ENST00000540756	PAPPA2	Q9BXP8	1791 aa		27.84	■■■□□ 2.05
TTC3-225	ENST00000540756	GJA10	Q969M2	543 aa		27.84	■■■□□ 2.05
TTC3-225	ENST00000540756	UIMC1	Q96RL1	719 aa		27.84	■■■□□ 2.05
TTC3-225	ENST00000540756	SCN4A	P35499	1836 aa		27.84	■■■□□ 2.05
TTC3-225	ENST00000540756	BIN1	O00499	593 aa		27.83	■■■□□ 2.05
TTC3-225	ENST00000540756	LONP1	P36776	959 aa	Known RBP	27.83	■■■□□ 2.05
TTC3-225	ENST00000540756	MDM2	Q00987	491 aa	Predicted RBP	27.83	■■■□□ 2.05
TTC3-225	ENST00000540756	CPXCR1	Q8N123	301 aa		27.83	■■■□□ 2.05
TTC3-225	ENST00000540756	ZC3H15	Q8WU90	426 aa	Known RBP	27.83	■■■□□ 2.05
TTC3-225	ENST00000540756	LAD1	O00515	517 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	CFB	P00751	764 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	PRR29	P0C7W0	189 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	ISM2	Q6H9L7	571 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	C11orf57	Q6ZUT1	292 aa	Predicted RBP	27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	MTMR9	Q96QG7	549 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	PPP1R12B	O60237	982 aa	Predicted RBP	27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	PRPH	P41219	470 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	FCHSD1	Q86WN1	690 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	RAVER2	Q9HCJ3	691 aa	Known RBP	27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	PPP1R9A	Q9ULJ8	1098 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	RLF	Q13129	1914 aa		27.82	■■■□□ 2.04
TTC3-225	ENST00000540756	TEC	P42680	631 aa		27.81	■■■□□ 2.04
TTC3-225	ENST00000540756	TXK	P42681	527 aa		27.81	■■■□□ 2.04
TTC3-225	ENST00000540756	CALCRL	Q16602	461 aa		27.81	■■■□□ 2.04
TTC3-225	ENST00000540756	CRYGN	Q8WXF5	182 aa		27.81	■■■□□ 2.04
TTC3-225	ENST00000540756	CLMN	Q96JQ2	1002 aa		27.81	■■■□□ 2.04
TTC3-225	ENST00000540756	CCPG1	Q9ULG6	757 aa		27.81	■■■□□ 2.04
TTC3-225	ENST00000540756	ICAM1	P05362	532 aa		27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	AP3B2	Q13367	1082 aa		27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	PPP4R3A	Q6IN85	833 aa		27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	SLC38A10	Q9HBR0	1119 aa		27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	DDX25	Q9UHL0	483 aa	Known RBP	27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	KARS	Q15046	597 aa	Known RBP	27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	LUZP1	Q86V48	1076 aa		27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	ATG4C	Q96DT6	458 aa		27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	WDR90	Q96KV7	1748 aa		27.8	■■■□□ 2.04
TTC3-225	ENST00000540756	SPDYE3	A6NKU9	549 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	PIK3CD	O00329	1044 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	ARHGAP4	P98171	946 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	FMR1	Q06787	632 aa	Known RBP eCLIP	27.79	■■■□□ 2.04	2e-10	■■■■□ 23.8
TTC3-225	ENST00000540756	E2F4	Q16254	413 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	C12orf42	Q96LP6	360 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	CBX8	Q9HC52	389 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	IQCA1L	A6NCM1	817 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	C19orf81	C9J6K1	198 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	CASP1	P29466	404 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	STX1A	Q16623	288 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	HAS1	Q92839	578 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	MRPL11	Q9Y3B7	192 aa	Known RBP	27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	PCDHA5	Q9Y5H7	936 aa		27.79	■■■□□ 2.04
TTC3-225	ENST00000540756	PTPRF	P10586	1907 aa		27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	ORC2	Q13416	577 aa	Predicted RBP	27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	DPCR1	Q3MIW9	517 aa		27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	FAM200A	Q8TCP9	573 aa		27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	STAM	Q92783	540 aa		27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	PLIN2	Q99541	437 aa		27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	ELP3	Q9H9T3	547 aa		27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	CSAD	Q9Y600	493 aa		27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	COL11A1	P12107	1806 aa	Predicted RBP	27.78	■■■□□ 2.04
TTC3-225	ENST00000540756	AFM	P43652	599 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	POSTN	Q15063	836 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	HOMER2	Q9NSB8	354 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	TUBE1	Q9UJT0	475 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	ABCB11	O95342	1321 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	VWA5A	O00534	786 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	NFIB	O00712	420 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	SLFN14	P0C7P3	912 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	IREB2	P48200	963 aa	Known RBP	27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	TTLL12	Q14166	644 aa	Predicted RBP	27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	ZRSR1	Q15695	479 aa	Known RBP	27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	CLEC4D	Q8WXI8	215 aa		27.77	■■■□□ 2.04
TTC3-225	ENST00000540756	GCOM1	H8Y6P7	765 aa	Predicted RBP	27.76	■■■□□ 2.03
TTC3-225	ENST00000540756	POLR2M	P0CAP2	368 aa		27.76	■■■□□ 2.03
TTC3-225	ENST00000540756	SREBF1	P36956	1147 aa		27.76	■■■□□ 2.03
TTC3-225	ENST00000540756	ZNF165	P49910	485 aa		27.76	■■■□□ 2.03
TTC3-225	ENST00000540756	USP11	P51784	963 aa		27.76	■■■□□ 2.03
TTC3-225	ENST00000540756	TRAF1	Q13077	416 aa		27.76	■■■□□ 2.03
TTC3-225	ENST00000540756	LRRC15	Q8TF66	581 aa		27.76	■■■□□ 2.03
TTC3-225	ENST00000540756	FOS	P01100	380 aa	Predicted RBP	27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	ALAS1	P13196	640 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	UBXN2A	P68543	259 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	MUM1L1	Q5H9M0	696 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	CYP2W1	Q8TAV3	490 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	PAGE5	Q96GU1	130 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	CLEC11A	Q9Y240	323 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	FAM86B1	E9PN63	330 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	FAM86B2	P0C5J1	330 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	MAP1S	Q66K74	1059 aa	Predicted RBP	27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	PDXDC2P	Q6P474	469 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	ELOA2	Q8IYF1	753 aa	Predicted RBP	27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	IGSF22	Q8N9C0	903 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	MTR	Q99707	1265 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	ANO10	Q9NW15	660 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	TMOD4	Q9NZQ9	345 aa		27.75	■■■□□ 2.03
TTC3-225	ENST00000540756	POTEM	A6NI47	508 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	TRAF5	O00463	557 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	UBA7	P41226	1012 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	TREML2	Q5T2D2	321 aa		27.74	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms