RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 DDX60Q8IY21 1712 aaKnown RBP12.5□□□□□ -0.41
SYNE1-237ENST00000539504 ESYT3A0FGR9 886 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 RASSF10A6NK89 507 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 GUCY2CP25092 1073 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 OTUD6BQ8N6M0 293 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 SH2D4AQ9H788 454 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 IL6STP40189 918 aaPredicted RBP12.49□□□□□ -0.41
SYNE1-237ENST00000539504 TFAP4Q01664 338 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 RNF187Q5TA31 235 aaPredicted RBP12.49□□□□□ -0.41
SYNE1-237ENST00000539504 PNMA1Q8ND90 353 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 MS4A14Q96JA4 679 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 CCDC43Q96MW1 224 aaKnown RBP12.49□□□□□ -0.41
SYNE1-237ENST00000539504 TTYH3Q9C0H2 523 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 CAPN7Q9Y6W3 813 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 CCNT1O60563 726 aaKnown RBP12.49□□□□□ -0.41
SYNE1-237ENST00000539504 SHOX2O60902 331 aaPredicted RBP12.49□□□□□ -0.41
SYNE1-237ENST00000539504 AMPD3Q01432 767 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 DYMQ7RTS9 669 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 MKNK2Q9HBH9 465 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 NLRC4Q9NPP4 1024 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 KBTBD4Q9NVX7 518 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 ARHGAP20Q9P2F6 1191 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 STX8Q9UNK0 236 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 NKRFO15226 690 aaKnown RBP eCLIP12.49□□□□□ -0.41
SYNE1-237ENST00000539504 KRT14P02533 472 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 TECP42680 631 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 NNTQ13423 1086 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 TXNRD1Q16881 649 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 EMBQ6PCB8 327 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 CDK5RAP3Q96JB5 506 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 TRIM9Q9C026 710 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 NFU1Q9UMS0 254 aa12.49□□□□□ -0.41
SYNE1-237ENST00000539504 SETQ01105 290 aaPredicted RBP12.48□□□□□ -0.41
SYNE1-237ENST00000539504 GUCY2DQ02846 1103 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 ZNF662Q6ZS27 426 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 MAATS1Q7Z4T9 603 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 POTEDQ86YR6 584 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 NOX5Q96PH1 765 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 EPB41L5Q9HCM4 733 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 RBM12Q9NTZ6 932 aaKnown RBP12.48□□□□□ -0.41
SYNE1-237ENST00000539504 LRRC53A6NM62 1247 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 EPHB6O15197 1021 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 MYL1P05976 194 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 PCP11498 1178 aaKnown RBP12.48□□□□□ -0.41
SYNE1-237ENST00000539504 ARID5AQ03989 594 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 CNNM4Q6P4Q7 775 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 IFT20Q8IY31 132 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 CALML4Q96GE6 196 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 CCSER1Q9C0I3 900 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 NDST4Q9H3R1 872 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 VAT1LQ9HCJ6 419 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 DCP1AQ9NPI6 582 aaPredicted RBP12.48□□□□□ -0.41
SYNE1-237ENST00000539504 PCDHA6Q9UN73 950 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 PCDHA8Q9Y5H6 950 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 GOLGA8HP0CJ92 632 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 USP8P40818 1118 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 NAPAP54920 295 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 GFPT1Q06210 699 aaPredicted RBP12.48□□□□□ -0.41
SYNE1-237ENST00000539504 CFAP221Q4G0U5 840 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 ALS2CLQ60I27 953 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 HAUS3Q68CZ6 603 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 TMC4Q7Z404 712 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 ZIM3Q96PE6 472 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 CPVLQ9H3G5 476 aa12.48□□□□□ -0.41
SYNE1-237ENST00000539504 HEXIM1O94992 359 aaKnown RBP12.47□□□□□ -0.41
SYNE1-237ENST00000539504 VWA3BQ502W6 1294 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 TTMPQ5BVD1 217 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 MIIPQ5JXC2 388 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 MCTP2Q6DN12 878 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 B4GALNT4Q76KP1 1039 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 PURBQ96QR8 312 aaKnown RBP12.47□□□□□ -0.41
SYNE1-237ENST00000539504 ERGIC2Q96RQ1 377 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.47□□□□□ -0.41
SYNE1-237ENST00000539504 PLAGL2Q9UPG8 496 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 BCL9LQ86UU0 1499 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 OR52Z1P0C646 297 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 HLTFQ14527 1009 aaKnown RBP eCLIP12.47□□□□□ -0.41
SYNE1-237ENST00000539504 KAT2BQ92831 832 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 TFCP2L1Q9NZI6 479 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 ALS2Q96Q42 1657 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 USP17L8P0C7I0 530 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 TXKP42681 527 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 CARSP49589 748 aaKnown RBP12.47□□□□□ -0.41
SYNE1-237ENST00000539504 MECOMQ03112 1051 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 BICDL1Q6ZP65 573 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 LRRC15Q8TF66 581 aa12.47□□□□□ -0.41
SYNE1-237ENST00000539504 ZSCAN5CA6NGD5 496 aaPredicted RBP12.46□□□□□ -0.41
SYNE1-237ENST00000539504 ORC4O43929 436 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 FTCDO95954 541 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 HPDP32754 393 aaPredicted RBP12.46□□□□□ -0.41
SYNE1-237ENST00000539504 COL18A1P39060 1754 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 CPP00450 1065 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 GNAQP50148 359 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 GUCY1A3Q02108 690 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 SOGA3Q5TF21 947 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 SV2BQ7L1I2 683 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 CCDC84Q86UT8 332 aaPredicted RBP12.46□□□□□ -0.41
SYNE1-237ENST00000539504 DYNLL2Q96FJ2 89 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 KRT12Q99456 494 aa12.46□□□□□ -0.41
SYNE1-237ENST00000539504 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms