RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 CDC25AP30304 524 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 ATP2B2Q01814 1243 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 NONOQ15233 471 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 SOGA3Q5TF21 947 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 RSBN1LQ6PCB5 846 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 RTKN2Q8IZC4 609 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 ZNF713Q8N859 430 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 MLKLQ8NB16 471 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 MTMR8Q96EF0 704 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 ST7Q9NRC1 585 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 ZNF277Q9NRM2 450 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 BIN2Q9UBW5 565 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 NEMFO60524 1076 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 ENTPD3O75355 529 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 VIL1P09327 827 aaKnown RBP12.13□□□□□ -0.47
CLIP1-210ENST00000538120 SLC16A2P36021 539 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 FANCCQ00597 558 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 RRP1BQ14684 758 aaKnown RBP12.13□□□□□ -0.47
CLIP1-210ENST00000538120 E4F1Q66K89 784 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-210ENST00000538120 KCTD1Q719H9 257 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 ZSCAN29Q8IWY8 852 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-210ENST00000538120 FANCLQ9NW38 375 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 NYAP2Q9P242 653 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 MYH8P13535 1937 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 PNMA6FA0A0J9YX94 578 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 PSMD14O00487 310 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 SF3B2Q13435 895 aaKnown RBP12.13□□□□□ -0.47
CLIP1-210ENST00000538120 SEPT2Q15019 361 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 PPP1R15BQ5SWA1 713 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 JAKMIP3Q5VZ66 844 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 DTHD1Q6ZMT9 781 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 MAMSTRQ6ZN01 415 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 IQUBQ8NA54 791 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 ZNF397Q8NF99 534 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-210ENST00000538120 SLC16A10Q8TF71 515 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 STAMQ92783 540 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 DPF2Q92785 391 aa12.13□□□□□ -0.47
CLIP1-210ENST00000538120 PP2D1A8MPX8 630 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 USP17L10C9JJH3 530 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 RAD17O75943 681 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 SMC2O95347 1197 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 PRPHP41219 470 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 TPM4P67936 248 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 GPATCH4Q5T3I0 446 aaKnown RBP12.12□□□□□ -0.47
CLIP1-210ENST00000538120 ARMCX5Q6P1M9 558 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 TBCKQ8TEA7 893 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 KANSL2Q9H9L4 492 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 LAD1O00515 517 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 GDF11O95390 407 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 KARSQ15046 597 aaKnown RBP12.12□□□□□ -0.47
CLIP1-210ENST00000538120 CCDC96Q2M329 555 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 LETM2Q2VYF4 491 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 NEK8Q86SG6 692 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 REXO1Q8N1G1 1221 aaKnown RBP12.12□□□□□ -0.47
CLIP1-210ENST00000538120 LARGE2Q8N3Y3 721 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 ENOX1Q8TC92 643 aaKnown RBP12.12□□□□□ -0.47
CLIP1-210ENST00000538120 LRRC15Q8TF66 581 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 ZNF446Q9NWS9 450 aa12.12□□□□□ -0.47
CLIP1-210ENST00000538120 COL2A1P02458 1487 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-210ENST00000538120 CCNT1O60563 726 aaKnown RBP12.11□□□□□ -0.47
CLIP1-210ENST00000538120 ADCY7P51828 1080 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 NAALADL2Q58DX5 795 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 TMC6Q7Z403 805 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 ERO1AQ96HE7 468 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 GSDMAQ96QA5 445 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 BLZF1Q9H2G9 400 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 SLU7O95391 586 aaKnown RBP12.11□□□□□ -0.47
CLIP1-210ENST00000538120 ZNF18P17022 549 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 CLK2P49760 499 aaKnown RBP12.11□□□□□ -0.47
CLIP1-210ENST00000538120 CUL4BQ13620 913 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 ERCC6LQ2NKX8 1250 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 SLFN13Q68D06 897 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 PPP1R18Q6NYC8 613 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 SYT10Q6XYQ8 523 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 TMEM179Q6ZVK1 233 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 TRMT44Q8IYL2 757 aaKnown RBP12.11□□□□□ -0.47
CLIP1-210ENST00000538120 SLAIN1Q8ND83 568 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 DCAF4Q8WV16 495 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 CCDC34Q96HJ3 373 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 PPP1R13BQ96KQ4 1090 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 PYM1Q9BRP8 204 aaKnown RBP12.11□□□□□ -0.47
CLIP1-210ENST00000538120 RIC8AQ9NPQ8 531 aa12.11□□□□□ -0.47
CLIP1-210ENST00000538120 PSME4Q14997 1843 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 PPP1R3GB7ZBB8 358 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 ZBTB5O15062 677 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 MYO1BO43795 1136 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 OR52Z1P0C646 297 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 GABPB1Q06547 395 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-210ENST00000538120 TERF2Q15554 542 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 PTPN21Q16825 1174 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 ABCB5Q2M3G0 1257 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 FAM43BQ6ZT52 329 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-210ENST00000538120 KRT222Q8N1A0 295 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 TRIM34Q9BYJ4 488 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 CCSER1Q9C0I3 900 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 DISC1Q9NRI5 854 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 ZNF70Q9UC06 446 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-210ENST00000538120 DACH1Q9UI36 760 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 CLRN2A0PK11 232 aa12.1□□□□□ -0.47
CLIP1-210ENST00000538120 TCP10L2B9ZVM9 353 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms