RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PPM1JQ5JR12 505 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 ARHGEF25Q86VW2 580 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 ZNF507Q8TCN5 953 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 ANKRD7Q92527 254 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 UTP4Q969X6 686 aaKnown RBP7.74□□□□□ -1.17
USP28-202ENST00000535607 DNAJC2Q99543 621 aaKnown RBP7.74□□□□□ -1.17
USP28-202ENST00000535607 SRRTQ9BXP5 876 aaKnown RBP7.74□□□□□ -1.17
USP28-202ENST00000535607 IFT57Q9NWB7 429 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 CRIM1Q9NZV1 1036 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 CALCOCO1Q9P1Z2 691 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 HIF3AQ9Y2N7 669 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 NCAPD2Q15021 1401 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 NWD2Q9ULI1 1742 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 ABCC4O15439 1325 aa7.74□□□□□ -1.17
USP28-202ENST00000535607 KDRP35968 1356 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 SMTNL1A8MU46 457 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 CTIFO43310 598 aaKnown RBP7.73□□□□□ -1.17
USP28-202ENST00000535607 HTATSF1O43719 755 aaKnown RBP7.73□□□□□ -1.17
USP28-202ENST00000535607 CAVIN2O95810 425 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 DRD2P14416 443 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 RAB6AP20340 208 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 GRK4P32298 578 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 SOX9P48436 509 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 EIF6P56537 245 aaKnown RBP7.73□□□□□ -1.17
USP28-202ENST00000535607 UBE2HP62256 183 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 CUL4AQ13619 759 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 TXNRD3Q86VQ6 643 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 RNF214Q8ND24 703 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 UBXN4Q92575 508 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 DDX17Q92841 729 aaKnown RBP7.73□□□□□ -1.17
USP28-202ENST00000535607 FANCD2OSQ96PS1 177 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 PLEKHF1Q96S99 279 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 PPP1R9AQ9ULJ8 1098 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.73□□□□□ -1.17
USP28-202ENST00000535607 SPATA31A6Q5VVP1 1343 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 PLCH1Q4KWH8 1693 aa7.73□□□□□ -1.17
USP28-202ENST00000535607 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.72□□□□□ -1.17
USP28-202ENST00000535607 KIF2AO00139 706 aaPredicted RBP7.72□□□□□ -1.17
USP28-202ENST00000535607 NEMFO60524 1076 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 CCDC192P0DO97 292 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 HCLS1P14317 486 aaPredicted RBP7.72□□□□□ -1.17
USP28-202ENST00000535607 HOXC9P31274 260 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 AMPHP49418 695 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 YARSP54577 528 aaKnown RBP7.72□□□□□ -1.17
USP28-202ENST00000535607 TTLL4Q14679 1199 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 MBTPS1Q14703 1052 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 RRS1Q15050 365 aaKnown RBP7.72□□□□□ -1.17
USP28-202ENST00000535607 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.72□□□□□ -1.17
USP28-202ENST00000535607 IP6K1Q92551 441 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 ANAPC16Q96DE5 110 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 TIGD1Q96MW7 591 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 GMLQ99445 158 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 WNT10AQ9GZT5 417 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 KCNF1Q9H3M0 494 aa7.72□□□□□ -1.17
USP28-202ENST00000535607 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.72□□□□□ -1.17
USP28-202ENST00000535607 KIAA0232Q92628 1395 aa7.71□□□□□ -1.17
USP28-202ENST00000535607 COL5A2P05997 1499 aaPredicted RBP7.71□□□□□ -1.18
USP28-202ENST00000535607 HTR3BO95264 441 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 TUBB4AP04350 444 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 NOS3P29474 1203 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 NEK4P51957 841 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 SLC20A2Q08357 652 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 MAP7Q14244 749 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 ADGRE1Q14246 886 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 ZBTB37Q5TC79 503 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 CCDC81Q6ZN84 652 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 CYFIP1Q7L576 1253 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 HID1Q8IV36 788 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.71□□□□□ -1.18
USP28-202ENST00000535607 CKAP2LQ8IYA6 745 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 SMYD4Q8IYR2 804 aaPredicted RBP7.71□□□□□ -1.18
USP28-202ENST00000535607 ANKRD44Q8N8A2 993 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 CCDC112Q8NEF3 446 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 OR6P1Q8NGX9 317 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 KIAA1524Q8TCG1 905 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 IPO4Q8TEX9 1081 aaKnown RBP7.71□□□□□ -1.18
USP28-202ENST00000535607 TMX3Q96JJ7 454 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 KLHL3Q9UH77 587 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 ADAM30Q9UKF2 790 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 PPT2Q9UMR5 302 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 ACTL7BQ9Y614 415 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 NRAPQ86VF7 1730 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 IGSF1Q8N6C5 1336 aa7.71□□□□□ -1.18
USP28-202ENST00000535607 GFRA2O00451 464 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 DHX15O43143 795 aaKnown RBP7.7□□□□□ -1.18
USP28-202ENST00000535607 NRDCO43847 1150 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 TIAF1O95411 115 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 IL13P35225 146 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 PREPP48147 710 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 CDK8P49336 464 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 TNNI3KQ59H18 835 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 SOGA3Q5TF21 947 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 KRT222Q8N1A0 295 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 C2CD4AQ8NCU7 369 aaPredicted RBP7.7□□□□□ -1.18
USP28-202ENST00000535607 FAM13CQ8NE31 585 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 ARMC5Q96C12 935 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 PRDM11Q9NQV5 511 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 REV1Q9UBZ9 1251 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 PCOLCE2Q9UKZ9 415 aa7.7□□□□□ -1.18
USP28-202ENST00000535607 DAGLAQ9Y4D2 1042 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms