RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 EEPD1Q7L9B9 569 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 SH3RF1Q7Z6J0 888 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 FBXO16Q8IX29 292 aaPredicted RBP5.92□□□□□ -1.46
USH1C-210ENST00000534556 C7orf61Q8IZ16 206 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 ZNF654Q8IZM8 581 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 SRBD1Q8N5C6 995 aaKnown RBP5.92□□□□□ -1.46
USH1C-210ENST00000534556 NCOA7Q8NI08 942 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 IL31RAQ8NI17 732 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 PPP1R13LQ8WUF5 828 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 COPS5Q92905 334 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 ZFP91Q96JP5 570 aaPredicted RBP5.92□□□□□ -1.46
USH1C-210ENST00000534556 PIGSQ96S52 555 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 UBAC1Q9BSL1 405 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 SENP6Q9GZR1 1112 aaPredicted RBP5.92□□□□□ -1.46
USH1C-210ENST00000534556 UPF3AQ9H1J1 476 aaKnown RBP5.92□□□□□ -1.46
USH1C-210ENST00000534556 BCAS3Q9H6U6 928 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 FAM217BQ9NTX9 383 aaPredicted RBP5.92□□□□□ -1.46
USH1C-210ENST00000534556 PPP4R2Q9NY27 417 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 RBM27Q9P2N5 1060 aaKnown RBP5.92□□□□□ -1.46
USH1C-210ENST00000534556 FBXO40Q9UH90 709 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 GNEQ9Y223 722 aaKnown RBP5.92□□□□□ -1.46
USH1C-210ENST00000534556 SNX14Q9Y5W7 946 aa5.92□□□□□ -1.46
USH1C-210ENST00000534556 RBM47A0AV96 593 aaKnown RBP5.91□□□□□ -1.46
USH1C-210ENST00000534556 DNM1LO00429 736 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 DTNBO60941 627 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 CALML3P27482 149 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 NKX3-2P78367 333 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 GHRHRQ02643 423 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 SNX17Q15036 470 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 KCNA10Q16322 511 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 CCDC178Q5BJE1 867 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 HABP4Q5JVS0 413 aaKnown RBP5.91□□□□□ -1.46
USH1C-210ENST00000534556 CHRDL2Q6WN34 429 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 SLC39A5Q6ZMH5 540 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 MSL3Q8N5Y2 521 aaKnown RBP5.91□□□□□ -1.46
USH1C-210ENST00000534556 SYTL5Q8TDW5 730 aaPredicted RBP5.91□□□□□ -1.46
USH1C-210ENST00000534556 PIBF1Q8WXW3 757 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 GPKOWQ92917 476 aaPredicted RBP eCLIP5.91□□□□□ -1.46
USH1C-210ENST00000534556 GDF15Q99988 308 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 ABHD16BQ9H3Z7 469 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 XPNPEP3Q9NQH7 507 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 NRBP1Q9UHY1 535 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 ZHX1Q9UKY1 873 aaPredicted RBP5.91□□□□□ -1.46
USH1C-210ENST00000534556 PHF24Q9UPV7 400 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 TELO2Q9Y4R8 837 aa5.91□□□□□ -1.46
USH1C-210ENST00000534556 CTDP1Q9Y5B0 961 aaPredicted RBP5.91□□□□□ -1.46
USH1C-210ENST00000534556 A0A1W2PQ45 241 aaPredicted RBP5.9□□□□□ -1.46
USH1C-210ENST00000534556 A0A1W2PQY0 241 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 PTPDC1A2A3K4 754 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 TRIM43BA6NCK2 446 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 SOX1O00570 391 aaPredicted RBP5.9□□□□□ -1.46
USH1C-210ENST00000534556 EVI5O60447 810 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 MSCO60682 206 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 DUSP11O75319 330 aaKnown RBP5.9□□□□□ -1.46
USH1C-210ENST00000534556 RGS20O76081 388 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 SEC24BO95487 1268 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 MYCNP04198 464 aaPredicted RBP5.9□□□□□ -1.46
USH1C-210ENST00000534556 RARBP10826 455 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 AKR1A1P14550 325 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 CDC27P30260 824 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 HOXA13P31271 388 aaPredicted RBP5.9□□□□□ -1.46
USH1C-210ENST00000534556 MCM5P33992 734 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 HSPA4P34932 840 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 LIFRP42702 1097 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 MAGEA10P43363 369 aaPredicted RBP5.9□□□□□ -1.46
USH1C-210ENST00000534556 NT5C2P49902 561 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 CDK7P50613 346 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 FXR1P51114 621 aaKnown RBP eCLIP5.9□□□□□ -1.46
USH1C-210ENST00000534556 HSD17B4P51659 736 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 ACLYP53396 1101 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 GJA9P57773 515 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 RTP1P59025 263 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 TRIM60Q495X7 471 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 TYW1BQ6NUM6 668 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 CCDC62Q6P9F0 684 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 APOA5Q6Q788 366 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 RNF207Q6ZRF8 634 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 RALYLQ86SE5 291 aaKnown RBP5.9□□□□□ -1.46
USH1C-210ENST00000534556 SGMS1Q86VZ5 419 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 FBXO11Q86XK2 927 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 HOMER1Q86YM7 354 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 RGS22Q8NE09 1264 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 TRIM43Q96BQ3 446 aaPredicted RBP5.9□□□□□ -1.46
USH1C-210ENST00000534556 VWCEQ96DN2 955 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 NEK1Q96PY6 1258 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 HTATIP2Q9BUP3 242 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 USP26Q9BXU7 913 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 SLC5A4Q9NY91 659 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 FAM184BQ9ULE4 1060 aa5.9□□□□□ -1.46
USH1C-210ENST00000534556 ABCB11O95342 1321 aa5.9□□□□□ -1.47
USH1C-210ENST00000534556 CNTNAP5Q8WYK1 1306 aa5.9□□□□□ -1.47
USH1C-210ENST00000534556 ATG2AQ2TAZ0 1938 aa5.89□□□□□ -1.47
USH1C-210ENST00000534556 MICAL3Q7RTP6 2002 aa5.89□□□□□ -1.47
USH1C-210ENST00000534556 MEIS2O14770 477 aa5.89□□□□□ -1.47
USH1C-210ENST00000534556 ZBTB5O15062 677 aa5.89□□□□□ -1.47
USH1C-210ENST00000534556 DYNC1LI2O43237 492 aaPredicted RBP5.89□□□□□ -1.47
USH1C-210ENST00000534556 CFBP00751 764 aa5.89□□□□□ -1.47
USH1C-210ENST00000534556 ASGR1P07306 291 aa5.89□□□□□ -1.47
USH1C-210ENST00000534556 C6orf222P0C671 652 aaPredicted RBP5.89□□□□□ -1.47
USH1C-210ENST00000534556 CAPN2P17655 700 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms