RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 MSRAQ9UJ68 235 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 PRR12Q9ULL5 1215 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 BRWD1Q9NSI6 2320 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 MYH6P13533 1939 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 SCN10AQ9Y5Y9 1956 aa18.57■□□□□ 0.56
CHMP4A-207ENST00000533523 RANBP6O60518 1105 aaKnown RBP18.57■□□□□ 0.56
CHMP4A-207ENST00000533523 NKX3-2P78367 333 aa18.57■□□□□ 0.56
CHMP4A-207ENST00000533523 RAB30Q15771 203 aa18.57■□□□□ 0.56
CHMP4A-207ENST00000533523 HERVK_113Q902F9 699 aa18.57■□□□□ 0.56
CHMP4A-207ENST00000533523 FAM122AQ96E09 287 aa18.57■□□□□ 0.56
CHMP4A-207ENST00000533523 PDGFCQ9NRA1 345 aa18.57■□□□□ 0.56
CHMP4A-207ENST00000533523 PLA2G6O60733 806 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 BMP1P13497 986 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 CCL23P55773 120 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 PSMC6P62333 389 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 TFF2Q03403 129 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 RCSD1Q6JBY9 416 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 SLC43A3Q8NBI5 491 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 KHSRPQ92945 711 aaKnown RBP eCLIP18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 TRPV6Q9H1D0 765 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 NKX2-4Q9H2Z4 354 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 INCENPQ9NQS7 918 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 PTPRSQ13332 1948 aa18.56■□□□□ 0.56
CHMP4A-207ENST00000533523 FOXP2O15409 715 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 B4GALT4O60513 344 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 FGBP02675 491 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 PDE1AP54750 535 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 OTOP2Q7RTS6 562 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 PURBQ96QR8 312 aaKnown RBP18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 NOC4LQ9BVI4 516 aaKnown RBP18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 LNPKQ9C0E8 428 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 VTA1Q9NP79 307 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 IL17RBQ9NRM6 502 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 TOMM22Q9NS69 142 aa18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 TRIP12Q14669 1992 aaPredicted RBP18.55■□□□□ 0.56
CHMP4A-207ENST00000533523 GRIN2DO15399 1336 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 COL4A4P53420 1690 aaPredicted RBP18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 ICAM1P05362 532 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 IGFBP4P22692 258 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 SLC16A2P36021 539 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 KCNQ1P51787 676 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 MRPS5P82675 430 aaKnown RBP18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 TMEM63BQ5T3F8 832 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 IQSEC1Q6DN90 963 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 TAPT1Q6NXT6 567 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 KIAA1211Q6ZU35 1233 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 DCAF4Q8WV16 495 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 WNT8AQ9H1J5 351 aa18.54■□□□□ 0.56
CHMP4A-207ENST00000533523 LAMA4Q16363 1823 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 TET1Q8NFU7 2136 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 ZBBXA8MT70 800 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 RBAK-RBAKDNI3L0D1 243 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 VPS53Q5VIR6 699 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 CHD1LQ86WJ1 897 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 EVI5LQ96CN4 794 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 RANBP17Q9H2T7 1088 aaKnown RBP18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 SLC28A3Q9HAS3 691 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 C11orf16Q9NQ32 467 aa18.53■□□□□ 0.56
CHMP4A-207ENST00000533523 FRMPD2Q68DX3 1309 aaPredicted RBP18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 C5orf42Q9H799 3197 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 PTPDC1A2A3K4 754 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 MYOGP15173 224 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 ALDH5A1P51649 535 aaPredicted RBP18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 NUCB1Q02818 461 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 RRP12Q5JTH9 1297 aaKnown RBP18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 SYDE2Q5VT97 1194 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 TTBK2Q6IQ55 1244 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 TICAM2Q86XR7 235 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 SCLYQ96I15 445 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 SEZ6LQ9BYH1 1024 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 ALDH8A1Q9H2A2 487 aaPredicted RBP18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 EPHX3Q9H6B9 360 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 ADD3Q9UEY8 706 aaKnown RBP18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 Q9Y3F1 56 aa18.52■□□□□ 0.56
CHMP4A-207ENST00000533523 KIAA1217Q5T5P2 1943 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 USP34Q70CQ2 3546 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 NFIBO00712 420 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 ORC4O43929 436 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 RABGGTBP53611 331 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 BAATQ14032 418 aaPredicted RBP18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 DUSP28Q4G0W2 176 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 PPP2R2DQ66LE6 453 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 SLC30A10Q6XR72 485 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 MICALL1Q8N3F8 863 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 WDR11Q9BZH6 1224 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 GPCPD1Q9NPB8 672 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 ANAPC4Q9UJX5 808 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 SLC4A7Q9Y6M7 1214 aa18.51■□□□□ 0.55
CHMP4A-207ENST00000533523 MYL3P08590 195 aa18.5■□□□□ 0.55
CHMP4A-207ENST00000533523 RPUSD2Q8IZ73 545 aaKnown RBP18.5■□□□□ 0.55
CHMP4A-207ENST00000533523 OR6J1Q8NGC5 347 aa18.5■□□□□ 0.55
CHMP4A-207ENST00000533523 MORC4Q8TE76 937 aa18.5■□□□□ 0.55
CHMP4A-207ENST00000533523 TRMT13Q9NUP7 481 aaKnown RBP18.5■□□□□ 0.55
CHMP4A-207ENST00000533523 POLR3EQ9NVU0 708 aa18.5■□□□□ 0.55
CHMP4A-207ENST00000533523 TNKSO95271 1327 aa18.49■□□□□ 0.55
CHMP4A-207ENST00000533523 ARHGEF15O94989 841 aa18.49■□□□□ 0.55
CHMP4A-207ENST00000533523 TOP1P11387 765 aaKnown RBP18.49■□□□□ 0.55
CHMP4A-207ENST00000533523 CYP2C9P11712 490 aa18.49■□□□□ 0.55
CHMP4A-207ENST00000533523 CALML3P27482 149 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms