RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 BRDTQ58F21 947 aaPredicted RBP17.27■□□□□ 0.36
VPS28-215ENST00000531924 TAPT1Q6NXT6 567 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 FAM126BQ8IXS8 530 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 CDX2Q99626 313 aaPredicted RBP17.27■□□□□ 0.36
VPS28-215ENST00000531924 SEZ6LQ9BYH1 1024 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 GPHNQ9NQX3 736 aaPredicted RBP17.27■□□□□ 0.36
VPS28-215ENST00000531924 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.26■□□□□ 0.35
VPS28-215ENST00000531924 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.26■□□□□ 0.35
VPS28-215ENST00000531924 DHX16O60231 1041 aaKnown RBP17.26■□□□□ 0.35
VPS28-215ENST00000531924 GOLGA8HP0CJ92 632 aa17.26■□□□□ 0.35
VPS28-215ENST00000531924 USH1GQ495M9 461 aa17.26■□□□□ 0.35
VPS28-215ENST00000531924 PNMA1Q8ND90 353 aa17.26■□□□□ 0.35
VPS28-215ENST00000531924 MORC4Q8TE76 937 aa17.26■□□□□ 0.35
VPS28-215ENST00000531924 WDR11Q9BZH6 1224 aa17.26■□□□□ 0.35
VPS28-215ENST00000531924 WDR19Q8NEZ3 1342 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 RAD50Q92878 1312 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 SNHG28P0DPA3 235 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 CPT1AP50416 773 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 DUSP28Q4G0W2 176 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 PSRC1Q6PGN9 363 aaPredicted RBP17.25■□□□□ 0.35
VPS28-215ENST00000531924 SLC30A10Q6XR72 485 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 CLEC4DQ8WXI8 215 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 ZSCAN10Q96SZ4 725 aaPredicted RBP17.25■□□□□ 0.35
VPS28-215ENST00000531924 UBAC1Q9BSL1 405 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 DSCC1Q9BVC3 393 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 KRT23Q9C075 422 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 MTIF3Q9H2K0 278 aaKnown RBP17.25■□□□□ 0.35
VPS28-215ENST00000531924 HIPK3Q9H422 1215 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 POLR3EQ9NVU0 708 aa17.25■□□□□ 0.35
VPS28-215ENST00000531924 A0A0C4DFX4 3053 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 B4E1Z4 1266 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 MYL3P08590 195 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 CSF2RAP15509 400 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 PTGS1P23219 599 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 CYP2C18P33260 490 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 RPS6P62753 249 aaKnown RBP17.24■□□□□ 0.35
VPS28-215ENST00000531924 PPP2R5BQ15173 497 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 OR6J1Q8NGC5 347 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.24■□□□□ 0.355e-7■■■■■ 29.2
VPS28-215ENST00000531924 UBA5Q9GZZ9 404 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 CNNM2Q9H8M5 875 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 MCM3APO60318 1980 aa17.24■□□□□ 0.35
VPS28-215ENST00000531924 TMEM265A0A087WTH1 108 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 CD4P01730 458 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 ACRP10323 421 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 FOSL2P15408 326 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 PSMC6P62333 389 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 CDC37Q16543 378 aaPredicted RBP17.23■□□□□ 0.35
VPS28-215ENST00000531924 ASPRV1Q53RT3 343 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.23■□□□□ 0.35
VPS28-215ENST00000531924 SLC43A3Q8NBI5 491 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 DNERQ8NFT8 737 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 SCFD2Q8WU76 684 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 MYLIPQ8WY64 445 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 TRPV6Q9H1D0 765 aa17.23■□□□□ 0.35
VPS28-215ENST00000531924 NKRFO15226 690 aaKnown RBP eCLIP17.22■□□□□ 0.35
VPS28-215ENST00000531924 PARP1P09874 1014 aaKnown RBP17.22■□□□□ 0.35
VPS28-215ENST00000531924 DNAJB2P25686 324 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 TMEM240Q5SV17 173 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 TMEM63BQ5T3F8 832 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 MCF2L2Q86YR7 1114 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 RGS22Q8NE09 1264 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 MAFAQ8NHW3 353 aaPredicted RBP17.22■□□□□ 0.35
VPS28-215ENST00000531924 TIFAQ96CG3 184 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 MTG1Q9BT17 334 aaPredicted RBP17.22■□□□□ 0.35
VPS28-215ENST00000531924 TTYH1Q9H313 450 aaPredicted RBP17.22■□□□□ 0.35
VPS28-215ENST00000531924 CPVLQ9H3G5 476 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 VAT1LQ9HCJ6 419 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 IL23AQ9NPF7 189 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 ZSWIM5Q9P217 1185 aa17.22■□□□□ 0.35
VPS28-215ENST00000531924 ABCB11O95342 1321 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 KPNA6O60684 536 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 FGBP02675 491 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 SUPT20HL2P0C7V6 817 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 TRDNQ13061 729 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 FAM47CQ5HY64 1035 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 ZNF365Q70YC5 407 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 ADGRF4Q8IZF3 695 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 ENAHQ8N8S7 591 aaPredicted RBP17.21■□□□□ 0.35
VPS28-215ENST00000531924 ANKS1AQ92625 1134 aa17.21■□□□□ 0.35
VPS28-215ENST00000531924 GRIN2DO15399 1336 aa17.21■□□□□ 0.34
VPS28-215ENST00000531924 TNKSO95271 1327 aa17.21■□□□□ 0.34
VPS28-215ENST00000531924 RBM47A0AV96 593 aaKnown RBP17.2■□□□□ 0.34
VPS28-215ENST00000531924 B4GALT4O60513 344 aa17.2■□□□□ 0.34
VPS28-215ENST00000531924 TXNP10599 105 aaKnown RBP17.2■□□□□ 0.34
VPS28-215ENST00000531924 CCL23P55773 120 aa17.2■□□□□ 0.34
VPS28-215ENST00000531924 TTLL4Q14679 1199 aa17.2■□□□□ 0.34
VPS28-215ENST00000531924 IFIT1BQ5T764 474 aaKnown RBP17.2■□□□□ 0.34
VPS28-215ENST00000531924 C16orf59Q7L2K0 433 aa17.2■□□□□ 0.34
VPS28-215ENST00000531924 RPUSD2Q8IZ73 545 aaKnown RBP17.2■□□□□ 0.34
VPS28-215ENST00000531924 RUFY2Q8WXA3 655 aa17.2■□□□□ 0.34
VPS28-215ENST00000531924 ALDH8A1Q9H2A2 487 aaPredicted RBP17.2■□□□□ 0.34
VPS28-215ENST00000531924 MRPL11Q9Y3B7 192 aaKnown RBP17.2■□□□□ 0.34
VPS28-215ENST00000531924 SUPT16HQ9Y5B9 1047 aaKnown RBP17.2■□□□□ 0.34
VPS28-215ENST00000531924 CHMP4BP1P59074 171 aa17.19■□□□□ 0.34
VPS28-215ENST00000531924 FBXO11Q86XK2 927 aa17.19■□□□□ 0.34
VPS28-215ENST00000531924 NSUN6Q8TEA1 469 aaKnown RBP17.19■□□□□ 0.34
VPS28-215ENST00000531924 NOC4LQ9BVI4 516 aaKnown RBP17.19■□□□□ 0.34
VPS28-215ENST00000531924 MAF1Q9H063 256 aa17.19■□□□□ 0.34
VPS28-215ENST00000531924 ZNF576Q9H609 170 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms