RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 L1CAMP32004 1257 aa7.09□□□□□ -1.27
CD44-230ENST00000528922 IRAK1P51617 712 aa7.09□□□□□ -1.27
CD44-230ENST00000528922 LONRF2Q1L5Z9 754 aa7.09□□□□□ -1.27
CD44-230ENST00000528922 CCDC103Q8IW40 242 aa7.09□□□□□ -1.27
CD44-230ENST00000528922 KCTD13Q8WZ19 329 aa7.09□□□□□ -1.27
CD44-230ENST00000528922 EXOC2Q96KP1 924 aa7.09□□□□□ -1.27
CD44-230ENST00000528922 RNPC3Q96LT9 517 aaKnown RBP7.09□□□□□ -1.27
CD44-230ENST00000528922 ERCC6L2Q5T890 1561 aa7.09□□□□□ -1.27
CD44-230ENST00000528922 GALK1P51570 392 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 SQSTM1Q13501 440 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 LAPTM5Q13571 262 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 NTRK3Q16288 839 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 INF2Q27J81 1249 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 C2orf27AQ580R0 203 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 XP32Q5T750 250 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 GIMAP6Q6P9H5 292 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 NOP9Q86U38 636 aaKnown RBP7.08□□□□□ -1.28
CD44-230ENST00000528922 NLRX1Q86UT6 975 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 SCUBE1Q8IWY4 988 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 ABHD4Q8TB40 342 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 SH3TC2Q8TF17 1288 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 FBXO41Q8TF61 875 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 KIRREL1Q96J84 757 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 MMP19Q99542 508 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 PTCH2Q9Y6C5 1203 aa7.08□□□□□ -1.28
CD44-230ENST00000528922 BLACEA4D250 179 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 WTIPA6NIX2 430 aaPredicted RBP7.07□□□□□ -1.28
CD44-230ENST00000528922 PPP1R11O60927 126 aaPredicted RBP7.07□□□□□ -1.28
CD44-230ENST00000528922 TESK1Q15569 626 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 JAZF1Q86VZ6 243 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 JAMLQ86YT9 394 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 LILRA2Q8N149 483 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 KISS1RQ969F8 398 aaPredicted RBP7.07□□□□□ -1.28
CD44-230ENST00000528922 ASIC4Q96FT7 647 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 CDC6Q99741 560 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 RNF32Q9H0A6 362 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 IMPACTQ9P2X3 320 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 GPR160Q9UJ42 338 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 TOP2AP11388 1531 aaKnown RBP7.07□□□□□ -1.28
CD44-230ENST00000528922 MROH2BQ7Z745 1585 aa7.07□□□□□ -1.28
CD44-230ENST00000528922 TRBV23OR9-2A0A075B6M9 112 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 TRBV23-1A0A0A0MS06 115 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 C7orf72A4D263 438 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 MEFVO15553 781 aaPredicted RBP7.06□□□□□ -1.28
CD44-230ENST00000528922 MSL3P1P0C860 447 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 TAL1P17542 331 aaPredicted RBP7.06□□□□□ -1.28
CD44-230ENST00000528922 MVKQ03426 396 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 ACBD5Q5T8D3 534 aaPredicted RBP7.06□□□□□ -1.28
CD44-230ENST00000528922 E4F1Q66K89 784 aaPredicted RBP7.06□□□□□ -1.28
CD44-230ENST00000528922 GALNT18Q6P9A2 607 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 SIRT2Q8IXJ6 389 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 PPIL6Q8IXY8 311 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 DPF3Q92784 378 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 SLC26A8Q96RN1 970 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 DHRS4Q9BTZ2 278 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 ACSL6Q9UKU0 697 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 MRPL42Q9Y6G3 142 aaKnown RBP7.06□□□□□ -1.28
CD44-230ENST00000528922 TAF6LQ9Y6J9 622 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 CARMIL2Q6F5E8 1435 aa7.06□□□□□ -1.28
CD44-230ENST00000528922 BIN1O00499 593 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 LCP1P13796 627 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 PRKCAP17252 672 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 LTBRP36941 435 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 SNX17Q15036 470 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 ZC3H12BQ5HYM0 836 aaKnown RBP7.05□□□□□ -1.28
CD44-230ENST00000528922 IQCEQ6IPM2 695 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 USP53Q70EK8 1073 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 RCBTB1Q8NDN9 531 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 ZSWIM2Q8NEG5 633 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 DIO2Q92813 273 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 MRPS23Q9Y3D9 190 aaKnown RBP7.05□□□□□ -1.28
CD44-230ENST00000528922 NPFFR2Q9Y5X5 522 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 WIZO95785 1651 aa7.05□□□□□ -1.28
CD44-230ENST00000528922 C6orf222P0C671 652 aaPredicted RBP7.04□□□□□ -1.28
CD44-230ENST00000528922 TMEM67Q5HYA8 995 aa7.04□□□□□ -1.28
CD44-230ENST00000528922 KCNT2Q6UVM3 1135 aa7.04□□□□□ -1.28
CD44-230ENST00000528922 ZSWIM9Q86XI8 627 aa7.04□□□□□ -1.28
CD44-230ENST00000528922 NUP43Q8NFH3 380 aa7.04□□□□□ -1.28
CD44-230ENST00000528922 NLGN2Q8NFZ4 835 aa7.04□□□□□ -1.28
CD44-230ENST00000528922 GULP1Q9UBP9 304 aa7.04□□□□□ -1.28
CD44-230ENST00000528922 YBX2Q9Y2T7 364 aaKnown RBP7.04□□□□□ -1.28
CD44-230ENST00000528922 TBX22Q9Y458 520 aa7.04□□□□□ -1.28
CD44-230ENST00000528922 ESYT3A0FGR9 886 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 NPHS1O60500 1241 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 MSCO60682 206 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 GLI1P08151 1106 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 JUNBP17275 347 aaPredicted RBP7.03□□□□□ -1.28
CD44-230ENST00000528922 KCNAB2Q13303 367 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 WRNQ14191 1432 aaPredicted RBP eCLIP7.03□□□□□ -1.28
CD44-230ENST00000528922 KCNMB1Q16558 191 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 ASXL2Q76L83 1435 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 IPO9Q96P70 1041 aaKnown RBP7.03□□□□□ -1.28
CD44-230ENST00000528922 TMEM260Q9NX78 707 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 FBLN5Q9UBX5 448 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 SMARCA4P51532 1647 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 ARAP1Q96P48 1450 aa7.03□□□□□ -1.28
CD44-230ENST00000528922 ZNF503-AS2A6NEH8 195 aa7.02□□□□□ -1.28
CD44-230ENST00000528922 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.02□□□□□ -1.28
CD44-230ENST00000528922 PNLIPP16233 465 aa7.02□□□□□ -1.28
CD44-230ENST00000528922 SUMO1P63165 101 aaKnown RBP7.02□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms