RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SMG5Q9UPR3 1016 aaKnown RBP6.46□□□□□ -1.38
CD44-217ENST00000525348 RWDD3Q9Y3V2 267 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 NPHP3-ACAD11A0A0J9YXS1 232 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 PAMP19021 973 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 CFPP27918 469 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 CDR1P51861 262 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 CORO7P57737 925 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 RAB33AQ14088 237 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 INF2Q27J81 1249 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 PRSS53Q2L4Q9 553 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 PLEKHN1Q494U1 663 aaPredicted RBP6.45□□□□□ -1.38
CD44-217ENST00000525348 TMC6Q7Z403 805 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 C8orf37Q96NL8 207 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 MTA3Q9BTC8 594 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 GULP1Q9UBP9 304 aa6.45□□□□□ -1.38
CD44-217ENST00000525348 A0A1W2PQ27 194 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 A0A1W2PQ64 194 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 A0A1W2PQC6 194 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 A0A1W2PQD8 194 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 C7orf72A4D263 438 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 TCAF2A6NFQ2 919 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 SRGAP3O43295 1099 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 GRIA2P42262 883 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 FZD5Q13467 585 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 SSPNQ14714 243 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 KCNA10Q16322 511 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 BICRALQ6AI39 1079 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 TMEM132EQ6IEE7 984 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 DENND5AQ6IQ26 1287 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 EEPD1Q7L9B9 569 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 CCDC103Q8IW40 242 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 KREMEN2Q8NCW0 462 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 DPF3Q92784 378 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 RXFP1Q9HBX9 757 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 LRP2BPQ9P2M1 347 aa6.44□□□□□ -1.38
CD44-217ENST00000525348 R3HCC1Q9Y3T6 440 aaKnown RBP6.44□□□□□ -1.38
CD44-217ENST00000525348 A0A1W2PQU0 124 aa6.43□□□□□ -1.38
CD44-217ENST00000525348 SCG5P05408 212 aa6.43□□□□□ -1.38
CD44-217ENST00000525348 GLI4P10075 376 aa6.43□□□□□ -1.38
CD44-217ENST00000525348 ANKLE2Q86XL3 938 aa6.43□□□□□ -1.38
CD44-217ENST00000525348 C1orf159Q96HA4 380 aa6.43□□□□□ -1.38
CD44-217ENST00000525348 MMP19Q99542 508 aa6.43□□□□□ -1.38
CD44-217ENST00000525348 TANGO6Q9C0B7 1094 aa6.43□□□□□ -1.38
CD44-217ENST00000525348 ZC3H12DA2A288 527 aaKnown RBP6.42□□□□□ -1.38
CD44-217ENST00000525348 STK10O94804 968 aaKnown RBP6.42□□□□□ -1.38
CD44-217ENST00000525348 CYBBP04839 570 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 SNRPB2P08579 225 aaKnown RBP6.42□□□□□ -1.38
CD44-217ENST00000525348 ECI1P42126 302 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 MAPKAPK2P49137 400 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 GFRA1P56159 465 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 LINC00310P59036 64 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 PPP2R2AP63151 447 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 PAQR3Q6TCH7 311 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 LCNL1Q6ZST4 164 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 LDHDQ86WU2 507 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 IGDCC3Q8IVU1 814 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 LRRC56Q8IYG6 542 aaPredicted RBP6.42□□□□□ -1.38
CD44-217ENST00000525348 LZTR1Q8N653 840 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 EPN3Q9H201 632 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 EPB41L4AQ9HCS5 686 aaPredicted RBP6.42□□□□□ -1.38
CD44-217ENST00000525348 SIRT5Q9NXA8 310 aa6.42□□□□□ -1.38
CD44-217ENST00000525348 TRBV23OR9-2A0A075B6M9 112 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 ABLIM1O14639 778 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 IRS4O14654 1257 aaPredicted RBP6.41□□□□□ -1.38
CD44-217ENST00000525348 FBLN1P23142 703 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 HOXC12P31275 282 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 NCKAP1LP55160 1127 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 NR1I3Q14994 352 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 TMEM145Q8NBT3 493 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 PLEKHO2Q8TD55 490 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 PANK1Q8TE04 598 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 FBXL7Q9UJT9 491 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 MSRB2Q9Y3D2 182 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 PCDHA5Q9Y5H7 936 aa6.41□□□□□ -1.38
CD44-217ENST00000525348 A0A1W2PQJ5 194 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 F8W031 263 aaPredicted RBP6.4□□□□□ -1.38
CD44-217ENST00000525348 N4BP3O15049 544 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 NPHS1O60500 1241 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 ATP2B1P20020 1258 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 PRR5P85299 388 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 ZNF200P98182 395 aaPredicted RBP6.4□□□□□ -1.38
CD44-217ENST00000525348 ZC3H14Q6PJT7 736 aaKnown RBP6.4□□□□□ -1.38
CD44-217ENST00000525348 SPOCD1Q6ZMY3 1216 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 TMEFF1Q8IYR6 380 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 MZB1Q8WU39 189 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 TOX2Q96NM4 488 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 BCAS3Q9H6U6 928 aa6.4□□□□□ -1.38
CD44-217ENST00000525348 FUCA1P04066 466 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 LCP1P13796 627 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 PI3P19957 117 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 TMEM62Q0P6H9 643 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 TESK1Q15569 626 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 SLC35F1Q5T1Q4 408 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 NLRP10Q86W26 655 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 TEX2Q8IWB9 1127 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 CKAP2LQ8IYA6 745 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 TRIM55Q9BYV6 548 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 ARHGEF4Q9NR80 690 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.39□□□□□ -1.39
CD44-217ENST00000525348 MARCH2Q9P0N8 246 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms