RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 IQSEC1Q6DN90 963 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 TAPT1Q6NXT6 567 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 HOMER1Q86YM7 354 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 ZNF654Q8IZM8 581 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 MTMR8Q96EF0 704 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 MPHOSPH6Q99547 160 aaKnown RBP24.3■■□□□ 1.48
VPS28-203ENST00000524521 MYL10Q9BUA6 226 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 RIOX1Q9H6W3 641 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 VTA1Q9NP79 307 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 A0A1W2PQ45 241 aaPredicted RBP24.29■■□□□ 1.48
VPS28-203ENST00000524521 A0A1W2PQY0 241 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 CCDC69A6NI79 296 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 SH2B2O14492 632 aaPredicted RBP24.29■■□□□ 1.48
VPS28-203ENST00000524521 ACLYP53396 1101 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 PDE4DQ08499 809 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 SLC35G1Q2M3R5 365 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 GNASQ5JWF2 1037 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 DNERQ8NFT8 737 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 PIGSQ96S52 555 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 LRRC2Q9BYS8 371 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 MAF1Q9H063 256 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 UPF3AQ9H1J1 476 aaKnown RBP24.29■■□□□ 1.48
VPS28-203ENST00000524521 PCDHA1Q9Y5I3 950 aa24.29■■□□□ 1.48
VPS28-203ENST00000524521 B4DLN1 442 aa24.28■■□□□ 1.48
VPS28-203ENST00000524521 SMPD1P17405 629 aa24.28■■□□□ 1.48
VPS28-203ENST00000524521 MRPL12P52815 198 aaKnown RBP24.28■■□□□ 1.48
VPS28-203ENST00000524521 CCSAPQ6IQ19 270 aaPredicted RBP24.28■■□□□ 1.48
VPS28-203ENST00000524521 PCSK9Q8NBP7 692 aaKnown RBP24.28■■□□□ 1.48
VPS28-203ENST00000524521 CTCFLQ8NI51 663 aaPredicted RBP24.28■■□□□ 1.48
VPS28-203ENST00000524521 NEK1Q96PY6 1258 aa24.28■■□□□ 1.48
VPS28-203ENST00000524521 AP5M1Q9H0R1 490 aa24.28■■□□□ 1.48
VPS28-203ENST00000524521 MOXD2PA6NHM9 499 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 DYNC1LI2O43237 492 aaPredicted RBP24.27■■□□□ 1.48
VPS28-203ENST00000524521 CYTH3O43739 400 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 PPP1R11O60927 126 aaPredicted RBP24.27■■□□□ 1.48
VPS28-203ENST00000524521 DDAH1O94760 285 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 CFBP00751 764 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 CST5P28325 142 aaPredicted RBP24.27■■□□□ 1.48
VPS28-203ENST00000524521 TRIM60Q495X7 471 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 ERICH6BQ5W0A0 696 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 RASEFQ8IZ41 740 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 SYTL5Q8TDW5 730 aaPredicted RBP24.27■■□□□ 1.48
VPS28-203ENST00000524521 TAAR1Q96RJ0 339 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 MAP3K14Q99558 947 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 PRO3102Q9H379 93 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 PCDH10Q9P2E7 1040 aa24.27■■□□□ 1.48
VPS28-203ENST00000524521 GNEQ9Y223 722 aaKnown RBP24.27■■□□□ 1.48
VPS28-203ENST00000524521 BAZ2BQ9UIF8 2168 aaKnown RBP24.26■■□□□ 1.47
VPS28-203ENST00000524521 ASGR1P07306 291 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 KIF5BP33176 963 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 LIFRP42702 1097 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 MAGEA10P43363 369 aaPredicted RBP24.26■■□□□ 1.47
VPS28-203ENST00000524521 BEX3Q00994 111 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 SNX17Q15036 470 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 TMEM63BQ5T3F8 832 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 TLK2Q86UE8 772 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 PIBF1Q8WXW3 757 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 VTI1AQ96AJ9 217 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 GDF15Q99988 308 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 WDR11Q9BZH6 1224 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 STARD7Q9NQZ5 370 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 PRKAG2Q9UGJ0 569 aa24.26■■□□□ 1.47
VPS28-203ENST00000524521 PNMA6FA0A0J9YX94 578 aa24.25■■□□□ 1.47
VPS28-203ENST00000524521 PTGS1P23219 599 aa24.25■■□□□ 1.47
VPS28-203ENST00000524521 TRAF1Q13077 416 aa24.25■■□□□ 1.47
VPS28-203ENST00000524521 TSGA10IPQ3SY00 556 aa24.25■■□□□ 1.47
VPS28-203ENST00000524521 C1orf53Q5VUE5 145 aa24.25■■□□□ 1.47
VPS28-203ENST00000524521 COL20A1Q9P218 1284 aa24.25■■□□□ 1.47
VPS28-203ENST00000524521 CTAGE5O15320 804 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 RXRAP19793 462 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 EDNRBP24530 442 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 TLE2Q04725 743 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 ADCK5Q3MIX3 580 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 NSUN6Q8TEA1 469 aaKnown RBP24.24■■□□□ 1.47
VPS28-203ENST00000524521 GLT1D1Q96MS3 346 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 RMDN3Q96TC7 470 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 Q9Y3F1 56 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 SLC12A7Q9Y666 1083 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 LRRC37A2A6NM11 1700 aa24.24■■□□□ 1.47
VPS28-203ENST00000524521 OPLAHO14841 1288 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 CALM1P0DP23 149 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 CALM2P0DP24 149 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 CALM3P0DP25 149 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 NKX3-2P78367 333 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 KRT32Q14532 448 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 DUSP28Q4G0W2 176 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 RAB11FIP4Q86YS3 637 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 LZTS2Q9BRK4 669 aa24.23■■□□□ 1.47
VPS28-203ENST00000524521 PRDM5Q9NQX1 630 aaPredicted RBP24.23■■□□□ 1.47
VPS28-203ENST00000524521 RBM47A0AV96 593 aaKnown RBP24.22■■□□□ 1.47
VPS28-203ENST00000524521 BMP8BP34820 402 aa24.22■■□□□ 1.47
VPS28-203ENST00000524521 GNAQP50148 359 aa24.22■■□□□ 1.47
VPS28-203ENST00000524521 MDM2Q00987 491 aaPredicted RBP24.22■■□□□ 1.47
VPS28-203ENST00000524521 EXOSC10Q01780 885 aaKnown RBP24.22■■□□□ 1.47
VPS28-203ENST00000524521 FSCN1Q16658 493 aaKnown RBP24.22■■□□□ 1.47
VPS28-203ENST00000524521 ARHGEF16Q5VV41 709 aa24.22■■□□□ 1.47
VPS28-203ENST00000524521 SYNE3Q6ZMZ3 975 aa24.22■■□□□ 1.47
VPS28-203ENST00000524521 DHX32Q7L7V1 743 aaKnown RBP24.22■■□□□ 1.47
VPS28-203ENST00000524521 RRP36Q96EU6 259 aaKnown RBP24.22■■□□□ 1.47
VPS28-203ENST00000524521 TCEANC2Q96MN5 208 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms