RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 NSUN6Q8TEA1 469 aaKnown RBP18.91■□□□□ 0.62
LSM1-205ENST00000523511 FERMT2Q96AC1 680 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 STARD7Q9NQZ5 370 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 ZMYND8Q9ULU4 1186 aaPredicted RBP18.91■□□□□ 0.62
LSM1-205ENST00000523511 ATP11BQ9Y2G3 1177 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 PCDHA1Q9Y5I3 950 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 SLC12A7Q9Y666 1083 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 SYNRGQ9UMZ2 1314 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 MKI67P46013 3256 aaKnown RBP18.9■□□□□ 0.62
LSM1-205ENST00000523511 PNMA6FA0A0J9YX94 578 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 ADAMTS4O75173 837 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 CST5P28325 142 aaPredicted RBP18.9■□□□□ 0.62
LSM1-205ENST00000523511 ACLYP53396 1101 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 RTP1P59025 263 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 SLC30A10Q6XR72 485 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 EEPD1Q7L9B9 569 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 SKAP1Q86WV1 359 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 ZNF654Q8IZM8 581 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 KLHDC9Q8NEP7 349 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 IWS1Q96ST2 819 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 RIOX1Q9H6W3 641 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 LY9Q9HBG7 655 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 TAF6LQ9Y6J9 622 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 LAMA4Q16363 1823 aa18.9■□□□□ 0.62
LSM1-205ENST00000523511 PDE4DIPQ5VU43 2346 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 NKRFO15226 690 aaKnown RBP eCLIP18.89■□□□□ 0.61
LSM1-205ENST00000523511 CABYRO75952 493 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 BMP8BP34820 402 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 ANTXR2P58335 489 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 TSGA10IPQ3SY00 556 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 HOMER1Q86YM7 354 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 MTMR8Q96EF0 704 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 SEZ6LQ9BYH1 1024 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 KATNBL1Q9H079 304 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 UPF3AQ9H1J1 476 aaKnown RBP18.89■□□□□ 0.61
LSM1-205ENST00000523511 SEC63Q9UGP8 760 aaKnown RBP18.89■□□□□ 0.61
LSM1-205ENST00000523511 ELP1O95163 1332 aa18.89■□□□□ 0.61
LSM1-205ENST00000523511 A0A1W2PQ45 241 aaPredicted RBP18.88■□□□□ 0.61
LSM1-205ENST00000523511 A0A1W2PQY0 241 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 DCDC2CA8MYV0 355 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 SH2B2O14492 632 aaPredicted RBP18.88■□□□□ 0.61
LSM1-205ENST00000523511 DYNC1LI2O43237 492 aaPredicted RBP18.88■□□□□ 0.61
LSM1-205ENST00000523511 CFBP00751 764 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 SYN1P17600 705 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 FGD1P98174 961 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 ARHGEF16Q5VV41 709 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 TAPT1Q6NXT6 567 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 DHX32Q7L7V1 743 aaKnown RBP18.88■□□□□ 0.61
LSM1-205ENST00000523511 TLK2Q86UE8 772 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 FBXO16Q8IX29 292 aaPredicted RBP18.88■□□□□ 0.61
LSM1-205ENST00000523511 RRP36Q96EU6 259 aaKnown RBP18.88■□□□□ 0.61
LSM1-205ENST00000523511 RMDN3Q96TC7 470 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 WDR11Q9BZH6 1224 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 MROH7Q68CQ1 1323 aa18.88■□□□□ 0.61
LSM1-205ENST00000523511 ASGR1P07306 291 aa18.87■□□□□ 0.61
LSM1-205ENST00000523511 NKX3-2P78367 333 aa18.87■□□□□ 0.61
LSM1-205ENST00000523511 SNX17Q15036 470 aa18.87■□□□□ 0.61
LSM1-205ENST00000523511 STXBP2Q15833 593 aa18.87■□□□□ 0.61
LSM1-205ENST00000523511 DUSP28Q4G0W2 176 aa18.87■□□□□ 0.61
LSM1-205ENST00000523511 SCFD2Q8WU76 684 aa18.87■□□□□ 0.61
LSM1-205ENST00000523511 PURBQ96QR8 312 aaKnown RBP18.87■□□□□ 0.61
LSM1-205ENST00000523511 PIGSQ96S52 555 aa18.87■□□□□ 0.61
LSM1-205ENST00000523511 RBM27Q9P2N5 1060 aaKnown RBP18.87■□□□□ 0.61
LSM1-205ENST00000523511 GNEQ9Y223 722 aaKnown RBP18.87■□□□□ 0.61
LSM1-205ENST00000523511 GCOM1H8Y6P7 765 aaPredicted RBP18.86■□□□□ 0.61
LSM1-205ENST00000523511 EPB41L2O43491 1005 aaKnown RBP18.86■□□□□ 0.61
LSM1-205ENST00000523511 EIF5BO60841 1220 aaKnown RBP18.86■□□□□ 0.61
LSM1-205ENST00000523511 POLR2MP0CAP2 368 aa18.86■□□□□ 0.61
LSM1-205ENST00000523511 SMPD1P17405 629 aa18.86■□□□□ 0.61
LSM1-205ENST00000523511 CPT1AP50416 773 aa18.86■□□□□ 0.61
LSM1-205ENST00000523511 TTLL4Q14679 1199 aa18.86■□□□□ 0.61
LSM1-205ENST00000523511 SYTL5Q8TDW5 730 aaPredicted RBP18.86■□□□□ 0.61
LSM1-205ENST00000523511 LENG1Q96BZ8 264 aaPredicted RBP18.86■□□□□ 0.61
LSM1-205ENST00000523511 TOX2Q96NM4 488 aa18.86■□□□□ 0.61
LSM1-205ENST00000523511 SPZ1Q9BXG8 430 aa18.86■□□□□ 0.61
LSM1-205ENST00000523511 SENP2Q9HC62 589 aa18.86■□□□□ 0.61
LSM1-205ENST00000523511 GPHNQ9NQX3 736 aaPredicted RBP18.86■□□□□ 0.61
LSM1-205ENST00000523511 ZNFX1Q9P2E3 1918 aaKnown RBP18.86■□□□□ 0.61
LSM1-205ENST00000523511 ASTN1O14525 1302 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.85■□□□□ 0.61
LSM1-205ENST00000523511 RBM47A0AV96 593 aaKnown RBP18.85■□□□□ 0.61
LSM1-205ENST00000523511 EDNRBP24530 442 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 PSMA5P28066 241 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 PPP2R5BQ15173 497 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 FSCN1Q16658 493 aaKnown RBP18.85■□□□□ 0.61
LSM1-205ENST00000523511 TRIM60Q495X7 471 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 CCSAPQ6IQ19 270 aaPredicted RBP18.85■□□□□ 0.61
LSM1-205ENST00000523511 SGMS1Q86VZ5 419 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 CUL5Q93034 780 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 TAAR1Q96RJ0 339 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 GDF15Q99988 308 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 UBE2OQ9C0C9 1292 aaKnown RBP18.85■□□□□ 0.61
LSM1-205ENST00000523511 PRDM5Q9NQX1 630 aaPredicted RBP18.85■□□□□ 0.61
LSM1-205ENST00000523511 PDGFCQ9NRA1 345 aa18.85■□□□□ 0.61
LSM1-205ENST00000523511 A0A0U1RQG5 324 aaPredicted RBP18.84■□□□□ 0.61
LSM1-205ENST00000523511 TLR3O15455 904 aaKnown RBP18.84■□□□□ 0.61
LSM1-205ENST00000523511 KPNA6O60684 536 aa18.84■□□□□ 0.61
LSM1-205ENST00000523511 EIF3JO75822 258 aaKnown RBP18.84■□□□□ 0.61
LSM1-205ENST00000523511 TXNP10599 105 aaKnown RBP18.84■□□□□ 0.61
LSM1-205ENST00000523511 MAGEA10P43363 369 aaPredicted RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms