RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 DIO2Q92813 273 aa10.02□□□□□ -0.81
LSM1-202ENST00000520286 MFSD14AQ96MC6 490 aa10.02□□□□□ -0.81
LSM1-202ENST00000520286 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.02□□□□□ -0.81
LSM1-202ENST00000520286 FAN1Q9Y2M0 1017 aa10.02□□□□□ -0.81
LSM1-202ENST00000520286 ARVCFO00192 962 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 MSCO60682 206 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 ZNF205O95201 554 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 SYPP08247 313 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 KCNAB2Q13303 367 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 CDKAL1Q5VV42 579 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 IQCEQ6IPM2 695 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 ARHGAP27Q6ZUM4 889 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 TSPYL5Q86VY4 417 aaPredicted RBP10.01□□□□□ -0.81
LSM1-202ENST00000520286 RAVER1Q8IY67 606 aaKnown RBP10.01□□□□□ -0.81
LSM1-202ENST00000520286 USHBP1Q8N6Y0 703 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 ORAI3Q9BRQ5 295 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 IFT22Q9H7X7 185 aa10.01□□□□□ -0.81
LSM1-202ENST00000520286 GLRX3O76003 335 aaKnown RBP10□□□□□ -0.81
LSM1-202ENST00000520286 LCP1P13796 627 aa10□□□□□ -0.81
LSM1-202ENST00000520286 BPIP17213 487 aa10□□□□□ -0.81
LSM1-202ENST00000520286 CHRNA4P43681 627 aa10□□□□□ -0.81
LSM1-202ENST00000520286 PCBP3P57721 371 aaKnown RBP10□□□□□ -0.81
LSM1-202ENST00000520286 TTF1Q15361 905 aaPredicted RBP10□□□□□ -0.81
LSM1-202ENST00000520286 SKOR2Q2VWA4 1001 aaPredicted RBP10□□□□□ -0.81
LSM1-202ENST00000520286 RTP2Q5QGT7 225 aa10□□□□□ -0.81
LSM1-202ENST00000520286 DUSP27Q5VZP5 1158 aa10□□□□□ -0.81
LSM1-202ENST00000520286 LBX2Q6XYB7 198 aa10□□□□□ -0.81
LSM1-202ENST00000520286 SPATS2Q86XZ4 545 aaKnown RBP10□□□□□ -0.81
LSM1-202ENST00000520286 KIF18BQ86Y91 864 aa10□□□□□ -0.81
LSM1-202ENST00000520286 LINC00116Q8NCU8 138 aa10□□□□□ -0.81
LSM1-202ENST00000520286 ALG1Q9BT22 464 aa10□□□□□ -0.81
LSM1-202ENST00000520286 ASPSCR1Q9BZE9 553 aa10□□□□□ -0.81
LSM1-202ENST00000520286 SSU72P8A0A1W2PR75 194 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 NEMP1O14524 444 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 ZEB2O60315 1214 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 PAMP19021 973 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 TPP2P29144 1249 aaPredicted RBP9.99□□□□□ -0.81
LSM1-202ENST00000520286 EPHB1P54762 984 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 OXCT1P55809 520 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 TMPRSS15P98073 1019 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 MTMR1Q13613 665 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 SART3Q15020 963 aaKnown RBP9.99□□□□□ -0.81
LSM1-202ENST00000520286 IGSF22Q8N9C0 903 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 TP53INP1Q96A56 240 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 TCFL5Q9UL49 500 aa9.99□□□□□ -0.81
LSM1-202ENST00000520286 NPHP3-ACAD11A0A0J9YXS1 232 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 WASH4PA8MWX3 477 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 M0R2C6 588 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 CBX4O00257 560 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 SRGAP2CP0DJJ0 459 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 ID4P47928 161 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 ITKQ08881 620 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 PAK1Q13153 545 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 NKPD1Q17RQ9 610 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 CD163Q86VB7 1156 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 RCBTB1Q8NDN9 531 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 MTMR8Q96EF0 704 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 MMP19Q99542 508 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 FOXP3Q9BZS1 431 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 APOBEC2Q9Y235 224 aaKnown RBP9.98□□□□□ -0.81
LSM1-202ENST00000520286 COQ6Q9Y2Z9 468 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 U3KQE9 123 aa9.98□□□□□ -0.81
LSM1-202ENST00000520286 TRBV23OR9-2A0A075B6M9 112 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 ZNF891A8MT65 544 aaPredicted RBP9.97□□□□□ -0.81
LSM1-202ENST00000520286 H3BS24 57 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 F13BP05160 661 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 PYGMP11217 842 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 PRR23CQ6ZRP0 262 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 NXPE1Q8N323 547 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 FAM181AQ8N9Y4 354 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 PCDH19Q8TAB3 1148 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 PUS7LQ9H0K6 701 aaKnown RBP9.97□□□□□ -0.81
LSM1-202ENST00000520286 MKNK2Q9HBH9 465 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 AP5S1Q9NUS5 200 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 ZSWIM5Q9P217 1185 aa9.97□□□□□ -0.81
LSM1-202ENST00000520286 C1QTNF9BB2RNN3 333 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 FKTNO75072 461 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 F2P00734 622 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 CKMP06732 381 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 INF2Q27J81 1249 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 KIZQ2M2Z5 673 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 RNF43Q68DV7 783 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 UBE2FQ969M7 185 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 HSPA12BQ96MM6 686 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 CDADC1Q9BWV3 514 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 PCDHA2Q9Y5H9 948 aa9.96□□□□□ -0.82
LSM1-202ENST00000520286 FGF10O15520 208 aaPredicted RBP9.95□□□□□ -0.82
LSM1-202ENST00000520286 GAS7O60861 476 aa9.95□□□□□ -0.82
LSM1-202ENST00000520286 IL2P60568 153 aa9.95□□□□□ -0.82
LSM1-202ENST00000520286 INSM1Q01101 510 aaPredicted RBP9.95□□□□□ -0.82
LSM1-202ENST00000520286 GAB4Q2WGN9 574 aa9.95□□□□□ -0.82
LSM1-202ENST00000520286 RNF111Q6ZNA4 994 aa9.95□□□□□ -0.82
LSM1-202ENST00000520286 SPACA3Q8IXA5 215 aa9.95□□□□□ -0.82
LSM1-202ENST00000520286 PTCHD1Q96NR3 888 aa9.95□□□□□ -0.82
LSM1-202ENST00000520286 SMAD5Q99717 465 aaKnown RBP9.95□□□□□ -0.82
LSM1-202ENST00000520286 METTL22Q9BUU2 404 aaPredicted RBP9.95□□□□□ -0.82
LSM1-202ENST00000520286 CELF4Q9BZC1 486 aaKnown RBP9.95□□□□□ -0.82
LSM1-202ENST00000520286 CCDC8Q9H0W5 538 aaPredicted RBP9.95□□□□□ -0.82
LSM1-202ENST00000520286 CABP5Q9NP86 173 aa9.95□□□□□ -0.82
LSM1-202ENST00000520286 DUSP13Q9UII6 198 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms