RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CEP170BQ9Y4F5 1589 aaPredicted RBP12.9□□□□□ -0.35
SYNPO-204ENST00000519664 SEL1L2Q5TEA6 688 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 STAG2Q8N3U4 1231 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 FAM84BQ96KN1 310 aaPredicted RBP12.89□□□□□ -0.35
SYNPO-204ENST00000519664 INO80Q9ULG1 1556 aaPredicted RBP12.89□□□□□ -0.35
SYNPO-204ENST00000519664 CEMIPQ8WUJ3 1361 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 SRGAP2O75044 1071 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 TRIM28Q13263 835 aaKnown RBP12.89□□□□□ -0.35
SYNPO-204ENST00000519664 TMEM47Q9BQJ4 181 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 PPANQ9NQ55 473 aaKnown RBP12.89□□□□□ -0.35
SYNPO-204ENST00000519664 DIP2CQ9Y2E4 1556 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 PIK3C2BO00750 1634 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 NDUFA10O95299 355 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 ALDH1B1P30837 517 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 GUCY2DQ02846 1103 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 GRIN1Q05586 938 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 KRT71Q3SY84 523 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 CCDC77Q9BR77 488 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 DISC1Q9NRI5 854 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 ASIC3Q9UHC3 531 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 CPDO75976 1380 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 SFI1A8K8P3 1242 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 SEMA3EO15041 775 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 PRCPP42785 496 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 GALNT17Q6IS24 598 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 TTC16Q8NEE8 873 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 KANSL2Q9H9L4 492 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 SALL3Q9BXA9 1300 aa12.89□□□□□ -0.35
SYNPO-204ENST00000519664 HOXA13P31271 388 aaPredicted RBP12.88□□□□□ -0.35
SYNPO-204ENST00000519664 CCDC105Q8IYK2 499 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 IGDCC4Q8TDY8 1250 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 UTP11Q9Y3A2 253 aaKnown RBP12.88□□□□□ -0.35
SYNPO-204ENST00000519664 FTCDO95954 541 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 PAK2Q13177 524 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 SH2D4AQ9H788 454 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 HYOU1Q9Y4L1 999 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 PTPRUQ92729 1446 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L5A8MUK1 530 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 TTLL1O95922 423 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 EEF1GP26641 437 aaKnown RBP12.88□□□□□ -0.35
SYNPO-204ENST00000519664 EIF4A3P38919 411 aaKnown RBP12.88□□□□□ -0.35
SYNPO-204ENST00000519664 SLC7A5Q01650 507 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 ABCB5Q2M3G0 1257 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 TCP11X2Q5H9J9 407 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 CEP85LQ5SZL2 805 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 CSRNP1Q96S65 589 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 MAP2P11137 1827 aaKnown RBP12.88□□□□□ -0.35
SYNPO-204ENST00000519664 KRIT1O00522 736 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 WDR44Q5JSH3 913 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 PPM1KQ8N3J5 372 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 HPS3Q969F9 1004 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 ADAMTS1Q9UHI8 967 aa12.88□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L15C9J2P7 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L13C9JLJ4 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L11C9JVI0 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L18D6R9N7 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L22D6RA61 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L17D6RBQ6 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L19D6RCP7 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L20D6RJB6 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 LRRN2O75325 713 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 MOCS3O95396 460 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 DLATP10515 647 aaKnown RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 CCNE1P24864 410 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 FKBP3Q00688 224 aaKnown RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L24Q0WX57 530 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 UAP1Q16222 522 aaPredicted RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 EXOC3L4Q17RC7 722 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 ODR4Q5SWX8 454 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 USP17L6PQ6QN14 398 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 SGMS1Q86VZ5 419 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 BRIP1Q9BX63 1249 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 RWDD2AQ9UIY3 292 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 FAN1Q9Y2M0 1017 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 CD163L1Q9NR16 1453 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 ANKRD65E5RJM6 399 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 MFAP3LO75121 409 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 SARNPP82979 210 aaKnown RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 C2orf54Q08AI8 447 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 GRM1Q13255 1194 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 FAM133AQ8N9E0 248 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 DHTKD1Q96HY7 919 aaPredicted RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 AMNQ9BXJ7 453 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 ALDH8A1Q9H2A2 487 aaPredicted RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 TMEM260Q9NX78 707 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 NRXN1Q9ULB1 1477 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 PNMA6AP0CW24 399 aaPredicted RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 TNNI1P19237 187 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 FMR1Q06787 632 aaKnown RBP eCLIP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 COL9A3Q14050 684 aaPredicted RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 MIER3Q7Z3K6 550 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 DGKHQ86XP1 1220 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 PPP1R14CQ8TAE6 165 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 KRT12Q99456 494 aa12.87□□□□□ -0.35
SYNPO-204ENST00000519664 MKRN1Q9UHC7 482 aaKnown RBP12.87□□□□□ -0.35
SYNPO-204ENST00000519664 AP5Z1O43299 807 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 H2AFZP0C0S5 128 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 H2AFVQ71UI9 128 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 CLEC10AQ8IUN9 316 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 SRBD1Q8N5C6 995 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms