RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 KIFC2Q96AC6 838 aa23.35■■□□□ 1.33
USP53-208ENST00000514305 SLKQ9H2G2 1235 aaPredicted RBP23.35■■□□□ 1.33
USP53-208ENST00000514305 MAD2L2Q9UI95 211 aa23.35■■□□□ 1.33
USP53-208ENST00000514305 ZNF214Q9UL59 606 aaPredicted RBP23.35■■□□□ 1.33
USP53-208ENST00000514305 BRPF3Q9ULD4 1205 aa23.35■■□□□ 1.33
USP53-208ENST00000514305 GJC2Q5T442 439 aaPredicted RBP23.34■■□□□ 1.33
USP53-208ENST00000514305 UBE2OQ9C0C9 1292 aaKnown RBP23.34■■□□□ 1.33
USP53-208ENST00000514305 DNAH12Q6ZR08 3092 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 CPLX1O14810 134 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 PGK2P07205 417 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 GOLGA8HP0CJ92 632 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 PDIA3P30101 505 aaKnown RBP23.33■■□□□ 1.33
USP53-208ENST00000514305 ATN1P54259 1190 aaPredicted RBP23.33■■□□□ 1.33
USP53-208ENST00000514305 PRAMEF19Q5SWL8 479 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 ANO1Q5XXA6 986 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 MYL10Q9BUA6 226 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 TEX13BQ9BXU2 312 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 SH2B1Q9NRF2 756 aaPredicted RBP23.33■■□□□ 1.33
USP53-208ENST00000514305 NRBP1Q9UHY1 535 aa23.33■■□□□ 1.33
USP53-208ENST00000514305 CDKL5O76039 1030 aa23.32■■□□□ 1.32
USP53-208ENST00000514305 SNRNP48Q6IEG0 339 aaKnown RBP23.32■■□□□ 1.32
USP53-208ENST00000514305 TDHQ8IZJ6 230 aa23.32■■□□□ 1.32
USP53-208ENST00000514305 REPS2Q8NFH8 660 aa23.32■■□□□ 1.32
USP53-208ENST00000514305 PRKAG2Q9UGJ0 569 aa23.32■■□□□ 1.32
USP53-208ENST00000514305 PRR12Q9ULL5 1215 aa23.32■■□□□ 1.32
USP53-208ENST00000514305 DIS3Q9Y2L1 958 aaKnown RBP23.32■■□□□ 1.32
USP53-208ENST00000514305 SOX1O00570 391 aaPredicted RBP23.31■■□□□ 1.32
USP53-208ENST00000514305 OAZ1P54368 228 aa23.31■■□□□ 1.32
USP53-208ENST00000514305 AKAP17AQ02040 695 aaKnown RBP23.31■■□□□ 1.32
USP53-208ENST00000514305 CCDC144CPQ8IYA2 1237 aa23.31■■□□□ 1.32
USP53-208ENST00000514305 LRCH3Q96II8 777 aa23.31■■□□□ 1.32
USP53-208ENST00000514305 TINF2Q9BSI4 451 aa23.31■■□□□ 1.32
USP53-208ENST00000514305 SPZ1Q9BXG8 430 aa23.31■■□□□ 1.32
USP53-208ENST00000514305 SMCHD1A6NHR9 2005 aa23.31■■□□□ 1.32
USP53-208ENST00000514305 RXRAP19793 462 aa23.3■■□□□ 1.32
USP53-208ENST00000514305 SLC16A2P36021 539 aa23.3■■□□□ 1.32
USP53-208ENST00000514305 TTBK2Q6IQ55 1244 aa23.3■■□□□ 1.32
USP53-208ENST00000514305 STAG2Q8N3U4 1231 aa23.3■■□□□ 1.32
USP53-208ENST00000514305 KIF12Q96FN5 646 aa23.3■■□□□ 1.32
USP53-208ENST00000514305 LBHD1Q9BQE6 289 aaPredicted RBP23.3■■□□□ 1.32
USP53-208ENST00000514305 UBA5Q9GZZ9 404 aa23.3■■□□□ 1.32
USP53-208ENST00000514305 SEC63Q9UGP8 760 aaKnown RBP23.3■■□□□ 1.32
USP53-208ENST00000514305 NID2Q14112 1375 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 PFKFB2O60825 505 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 RARBP10826 455 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 SLC4A3P48751 1232 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 RTP1P59025 263 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 MDM2Q00987 491 aaPredicted RBP23.29■■□□□ 1.32
USP53-208ENST00000514305 ZNF792Q3KQV3 632 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 TMTC3Q6ZXV5 915 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 NOL8Q76FK4 1167 aaKnown RBP23.29■■□□□ 1.32
USP53-208ENST00000514305 ADGRF4Q8IZF3 695 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 RRP36Q96EU6 259 aaKnown RBP23.29■■□□□ 1.32
USP53-208ENST00000514305 DDX11Q96FC9 970 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 RIOX1Q9H6W3 641 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 SLC38A10Q9HBR0 1119 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 VAT1LQ9HCJ6 419 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 TPCN1Q9ULQ1 816 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 CNPY2Q9Y2B0 182 aa23.29■■□□□ 1.32
USP53-208ENST00000514305 CCT2P78371 535 aaKnown RBP23.28■■□□□ 1.32
USP53-208ENST00000514305 STK3Q13188 491 aa23.28■■□□□ 1.32
USP53-208ENST00000514305 LRIT3Q3SXY7 679 aa23.28■■□□□ 1.32
USP53-208ENST00000514305 RAB11FIP4Q86YS3 637 aa23.28■■□□□ 1.32
USP53-208ENST00000514305 TRIM22Q8IYM9 498 aa23.28■■□□□ 1.32
USP53-208ENST00000514305 CPXCR1Q8N123 301 aa23.28■■□□□ 1.32
USP53-208ENST00000514305 RANBP17Q9H2T7 1088 aaKnown RBP23.28■■□□□ 1.32
USP53-208ENST00000514305 XPNPEP3Q9NQH7 507 aa23.28■■□□□ 1.32
USP53-208ENST00000514305 ATP11BQ9Y2G3 1177 aa23.28■■□□□ 1.32
USP53-208ENST00000514305 LAMA3Q16787 3333 aa23.28■■□□□ 1.32
USP53-208ENST00000514305 ATP2A1O14983 1001 aa23.27■■□□□ 1.32
USP53-208ENST00000514305 LRRC41Q15345 812 aa23.27■■□□□ 1.32
USP53-208ENST00000514305 TKFCQ3LXA3 575 aa23.27■■□□□ 1.32
USP53-208ENST00000514305 SLC39A5Q6ZMH5 540 aa23.27■■□□□ 1.32
USP53-208ENST00000514305 LARP6Q9BRS8 491 aaKnown RBP23.27■■□□□ 1.32
USP53-208ENST00000514305 ADD1P35611 737 aaKnown RBP23.26■■□□□ 1.31
USP53-208ENST00000514305 GPR153Q6NV75 609 aa23.26■■□□□ 1.31
USP53-208ENST00000514305 RASGRP2Q7LDG7 609 aa23.26■■□□□ 1.31
USP53-208ENST00000514305 RNF180Q86T96 592 aa23.26■■□□□ 1.31
USP53-208ENST00000514305 MSL3Q8N5Y2 521 aaKnown RBP23.26■■□□□ 1.31
USP53-208ENST00000514305 LTBP2Q14767 1821 aa23.26■■□□□ 1.31
USP53-208ENST00000514305 ZBTB5O15062 677 aa23.25■■□□□ 1.31
USP53-208ENST00000514305 AKR1A1P14550 325 aa23.25■■□□□ 1.31
USP53-208ENST00000514305 IFNAR1P17181 557 aa23.25■■□□□ 1.31
USP53-208ENST00000514305 ADCYAP1R1P41586 468 aa23.25■■□□□ 1.31
USP53-208ENST00000514305 CDC37Q16543 378 aaPredicted RBP23.25■■□□□ 1.31
USP53-208ENST00000514305 ME3Q16798 604 aa23.25■■□□□ 1.31
USP53-208ENST00000514305 SRBD1Q8N5C6 995 aaKnown RBP23.25■■□□□ 1.31
USP53-208ENST00000514305 JMJD4Q9H9V9 463 aa23.25■■□□□ 1.31
USP53-208ENST00000514305 RAVER2Q9HCJ3 691 aaKnown RBP23.25■■□□□ 1.31
USP53-208ENST00000514305 FBXO40Q9UH90 709 aa23.25■■□□□ 1.31
USP53-208ENST00000514305 RIPK3Q9Y572 518 aa23.25■■□□□ 1.31
USP53-208ENST00000514305 PNMA6FA0A0J9YX94 578 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 PLEKHA8P1O95397 391 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 ICAM1P05362 532 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 CDC27P30260 824 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 SSRP1Q08945 709 aaKnown RBP23.24■■□□□ 1.31
USP53-208ENST00000514305 FBXO11Q86XK2 927 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 HSCBQ8IWL3 235 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 ANKRD35Q8N283 1001 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 CCDC82Q8N4S0 544 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms