RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 POU3F3P20264 500 aaPredicted RBP24.15■■□□□ 1.46
SQSTM1-215ENST00000514093 TSHZ3Q63HK5 1081 aa24.15■■□□□ 1.46
SQSTM1-215ENST00000514093 IFNL3Q8IZI9 196 aa24.15■■□□□ 1.46
SQSTM1-215ENST00000514093 GMCL1Q96IK5 515 aa24.15■■□□□ 1.46
SQSTM1-215ENST00000514093 VTA1Q9NP79 307 aa24.15■■□□□ 1.46
SQSTM1-215ENST00000514093 PATL2C9JE40 543 aaKnown RBP24.14■■□□□ 1.45
SQSTM1-215ENST00000514093 TLL1O43897 1013 aa24.14■■□□□ 1.45
SQSTM1-215ENST00000514093 PFKMP08237 780 aa24.14■■□□□ 1.45
SQSTM1-215ENST00000514093 SUPT20HL2P0C7V6 817 aa24.14■■□□□ 1.45
SQSTM1-215ENST00000514093 DUSP28Q4G0W2 176 aa24.14■■□□□ 1.45
SQSTM1-215ENST00000514093 PRR12Q9ULL5 1215 aa24.14■■□□□ 1.45
SQSTM1-215ENST00000514093 MTMR7Q9Y216 660 aa24.14■■□□□ 1.45
SQSTM1-215ENST00000514093 MS4A1P11836 297 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 ACTN1P12814 892 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 GNAT2P19087 354 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 PURAQ00577 322 aaKnown RBP24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 TAP1Q03518 808 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 FAM47CQ5HY64 1035 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 SPRED2Q7Z698 418 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 KHSRPQ92945 711 aaKnown RBP eCLIP24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 WDR11Q9BZH6 1224 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 CCPG1Q9ULG6 757 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 COG5Q9UP83 839 aa24.13■■□□□ 1.45
SQSTM1-215ENST00000514093 PDE4BQ07343 736 aa24.12■■□□□ 1.45
SQSTM1-215ENST00000514093 RCSD1Q6JBY9 416 aa24.12■■□□□ 1.45
SQSTM1-215ENST00000514093 SLC9A7Q96T83 725 aa24.12■■□□□ 1.45
SQSTM1-215ENST00000514093 SEC62Q99442 399 aaKnown RBP24.12■■□□□ 1.45
SQSTM1-215ENST00000514093 FTOQ9C0B1 505 aaKnown RBP eCLIP24.12■■□□□ 1.458e-6■■■□□ 15.4
SQSTM1-215ENST00000514093 POLR3EQ9NVU0 708 aa24.12■■□□□ 1.45
SQSTM1-215ENST00000514093 STX8Q9UNK0 236 aa24.12■■□□□ 1.45
SQSTM1-215ENST00000514093 HCN4Q9Y3Q4 1203 aa24.12■■□□□ 1.45
SQSTM1-215ENST00000514093 PLIN4Q96Q06 1357 aa24.12■■□□□ 1.45
SQSTM1-215ENST00000514093 BAATQ14032 418 aaPredicted RBP24.11■■□□□ 1.45
SQSTM1-215ENST00000514093 NBPF20Q3BBV1 942 aa24.11■■□□□ 1.45
SQSTM1-215ENST00000514093 TMEM31Q5JXX7 168 aa24.11■■□□□ 1.45
SQSTM1-215ENST00000514093 MORC4Q8TE76 937 aa24.11■■□□□ 1.45
SQSTM1-215ENST00000514093 HLA-CQ95604 372 aa24.11■■□□□ 1.45
SQSTM1-215ENST00000514093 INCENPQ9NQS7 918 aa24.11■■□□□ 1.45
SQSTM1-215ENST00000514093 LCTP09848 1927 aa24.1■■□□□ 1.45
SQSTM1-215ENST00000514093 NMT2O60551 498 aa24.1■■□□□ 1.45
SQSTM1-215ENST00000514093 PLA2G6O60733 806 aa24.1■■□□□ 1.45
SQSTM1-215ENST00000514093 GRB10Q13322 594 aa24.1■■□□□ 1.45
SQSTM1-215ENST00000514093 HERC6Q8IVU3 1022 aa24.1■■□□□ 1.45
SQSTM1-215ENST00000514093 OR6J1Q8NGC5 347 aa24.1■■□□□ 1.45
SQSTM1-215ENST00000514093 MTG1Q9BT17 334 aaPredicted RBP24.1■■□□□ 1.45
SQSTM1-215ENST00000514093 GPHNQ9NQX3 736 aaPredicted RBP24.1■■□□□ 1.45
SQSTM1-215ENST00000514093 IQCF3P0C7M6 154 aa24.09■■□□□ 1.45
SQSTM1-215ENST00000514093 CPT1AP50416 773 aa24.09■■□□□ 1.45
SQSTM1-215ENST00000514093 ALDH5A1P51649 535 aaPredicted RBP24.09■■□□□ 1.45
SQSTM1-215ENST00000514093 PPARAQ07869 468 aa24.09■■□□□ 1.45
SQSTM1-215ENST00000514093 RETREG2Q8NC44 543 aa24.09■■□□□ 1.45
SQSTM1-215ENST00000514093 PHOSPHO2Q8TCD6 241 aa24.09■■□□□ 1.45
SQSTM1-215ENST00000514093 IL17RBQ9NRM6 502 aa24.09■■□□□ 1.45
SQSTM1-215ENST00000514093 FAM86C2PA6NEL3 165 aa24.08■■□□□ 1.45
SQSTM1-215ENST00000514093 KIF28PB7ZC32 967 aa24.08■■□□□ 1.45
SQSTM1-215ENST00000514093 ZFYP08048 801 aaPredicted RBP24.08■■□□□ 1.45
SQSTM1-215ENST00000514093 RFC2P35250 354 aa24.08■■□□□ 1.45
SQSTM1-215ENST00000514093 TTBK2Q6IQ55 1244 aa24.08■■□□□ 1.45
SQSTM1-215ENST00000514093 NACAP1Q9BZK3 213 aa24.08■■□□□ 1.45
SQSTM1-215ENST00000514093 NAPBQ9H115 298 aa24.08■■□□□ 1.45
SQSTM1-215ENST00000514093 NFIBO00712 420 aa24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 LPXNO60711 386 aa24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 ICAM1P05362 532 aa24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 SLC3A2P08195 630 aaKnown RBP24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 SLC16A2P36021 539 aa24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 CHMP4BP1P59074 171 aa24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 TMCO2Q7Z6W1 182 aaPredicted RBP24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 C11orf16Q9NQ32 467 aa24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 ADD3Q9UEY8 706 aaKnown RBP24.07■■□□□ 1.44
SQSTM1-215ENST00000514093 PTPDC1A2A3K4 754 aa24.06■■□□□ 1.44
SQSTM1-215ENST00000514093 TSPY2A6NKD2 308 aa24.06■■□□□ 1.44
SQSTM1-215ENST00000514093 RBAK-RBAKDNI3L0D1 243 aa24.06■■□□□ 1.44
SQSTM1-215ENST00000514093 CCDC96Q2M329 555 aa24.06■■□□□ 1.44
SQSTM1-215ENST00000514093 COPS5Q92905 334 aa24.06■■□□□ 1.44
SQSTM1-215ENST00000514093 ARIH1Q9Y4X5 557 aaPredicted RBP24.06■■□□□ 1.44
SQSTM1-215ENST00000514093 RBM47A0AV96 593 aaKnown RBP24.05■■□□□ 1.44
SQSTM1-215ENST00000514093 LCHNA4D1U4 455 aa24.05■■□□□ 1.44
SQSTM1-215ENST00000514093 CALML3P27482 149 aa24.05■■□□□ 1.44
SQSTM1-215ENST00000514093 CTDSPL2Q05D32 466 aa24.05■■□□□ 1.44
SQSTM1-215ENST00000514093 RANBP17Q9H2T7 1088 aaKnown RBP24.05■■□□□ 1.44
SQSTM1-215ENST00000514093 CD320Q9NPF0 282 aa24.05■■□□□ 1.44
SQSTM1-215ENST00000514093 PITPNM1O00562 1244 aa24.04■■□□□ 1.44
SQSTM1-215ENST00000514093 NFRKBQ6P4R8 1299 aa24.04■■□□□ 1.44
SQSTM1-215ENST00000514093 SLC30A10Q6XR72 485 aa24.04■■□□□ 1.44
SQSTM1-215ENST00000514093 GPATCH3Q96I76 525 aa24.04■■□□□ 1.44
SQSTM1-215ENST00000514093 NOD1Q9Y239 953 aa24.04■■□□□ 1.44
SQSTM1-215ENST00000514093 BRDTQ58F21 947 aaPredicted RBP24.03■■□□□ 1.44
SQSTM1-215ENST00000514093 TET1Q8NFU7 2136 aa24.03■■□□□ 1.44
SQSTM1-215ENST00000514093 GDPD5Q8WTR4 605 aa24.03■■□□□ 1.44
SQSTM1-215ENST00000514093 CHMP4BQ9H444 224 aaKnown RBP24.03■■□□□ 1.44
SQSTM1-215ENST00000514093 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.03■■□□□ 1.445e-7■■■□□ 16.2
SQSTM1-215ENST00000514093 GPR37L1O60883 481 aa24.02■■□□□ 1.44
SQSTM1-215ENST00000514093 KCNJ6P48051 423 aa24.02■■□□□ 1.44
SQSTM1-215ENST00000514093 BFSP2Q13515 415 aa24.02■■□□□ 1.44
SQSTM1-215ENST00000514093 PPP2R5BQ15173 497 aa24.02■■□□□ 1.44
SQSTM1-215ENST00000514093 PPP4R3BQ5MIZ7 849 aa24.02■■□□□ 1.44
SQSTM1-215ENST00000514093 MTUS1Q9ULD2 1270 aa24.02■■□□□ 1.44
SQSTM1-215ENST00000514093 FRMPD2Q68DX3 1309 aaPredicted RBP24.02■■□□□ 1.44
SQSTM1-215ENST00000514093 SCN10AQ9Y5Y9 1956 aa24.02■■□□□ 1.43
SQSTM1-215ENST00000514093 RANBP6O60518 1105 aaKnown RBP24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms