RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 FTOQ9C0B1 505 aaKnown RBP eCLIP13.04□□□□□ -0.32
DDX41-216ENST00000513562 ZNF287Q9HBT7 754 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 EPB41L4AQ9HCS5 686 aaPredicted RBP13.04□□□□□ -0.32
DDX41-216ENST00000513562 LCHNA4D1U4 455 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 RAB11FIP3O75154 756 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 MYL3P08590 195 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 NBPF20Q3BBV1 942 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 LEXMQ3ZCV2 418 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 FAM178BQ8IXR5 827 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 GJD3Q8N144 294 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 RETREG2Q8NC44 543 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 GDPD5Q8WTR4 605 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 PURBQ96QR8 312 aaKnown RBP13.03□□□□□ -0.32
DDX41-216ENST00000513562 WDR11Q9BZH6 1224 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 BCL11AQ9H165 835 aa13.03□□□□□ -0.32
DDX41-216ENST00000513562 UBE2ZQ9H832 354 aaPredicted RBP13.03□□□□□ -0.32
DDX41-216ENST00000513562 MCM3APO60318 1980 aa13.02□□□□□ -0.32
DDX41-216ENST00000513562 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 LOC102724159A0A0B4J2E5 919 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 RBM47A0AV96 593 aaKnown RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 HMMRO75330 724 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 SLC1A4P43007 532 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 MRE11P49959 708 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 WDR5P61964 334 aaKnown RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 PTPN11Q06124 597 aaPredicted RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 IKQ13123 557 aaPredicted RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 BFSP2Q13515 415 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 PWP2Q15269 919 aaKnown RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 LRRFIP1Q32MZ4 808 aaKnown RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 FAM47CQ5HY64 1035 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 SIRT2Q8IXJ6 389 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 NEDD1Q8NHV4 660 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 GPHNQ9NQX3 736 aaPredicted RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 ISY1Q9ULR0 285 aaKnown RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 MYO9BQ13459 2157 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 MUC6Q6W4X9 2439 aa13.02□□□□□ -0.33
DDX41-216ENST00000513562 COL4A4P53420 1690 aaPredicted RBP13.02□□□□□ -0.33
DDX41-216ENST00000513562 ALADP13716 330 aa13.01□□□□□ -0.33
DDX41-216ENST00000513562 KCNJ6P48051 423 aa13.01□□□□□ -0.33
DDX41-216ENST00000513562 ALDH5A1P51649 535 aaPredicted RBP13.01□□□□□ -0.33
DDX41-216ENST00000513562 NSMFQ6X4W1 530 aa13.01□□□□□ -0.33
DDX41-216ENST00000513562 OR6J1Q8NGC5 347 aa13.01□□□□□ -0.33
DDX41-216ENST00000513562 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.01□□□□□ -0.33
DDX41-216ENST00000513562 PANK1Q8TE04 598 aa13.01□□□□□ -0.33
DDX41-216ENST00000513562 OSBP2Q969R2 916 aa13.01□□□□□ -0.33
DDX41-216ENST00000513562 SUGCTQ9HAC7 445 aa13.01□□□□□ -0.33
DDX41-216ENST00000513562 ADD3Q9UEY8 706 aaKnown RBP13.01□□□□□ -0.33
DDX41-216ENST00000513562 PRR12Q9ULL5 1215 aa13.01□□□□□ -0.33
DDX41-216ENST00000513562 RAD50Q92878 1312 aa13□□□□□ -0.33
DDX41-216ENST00000513562 A6NJR5 290 aa13□□□□□ -0.33
DDX41-216ENST00000513562 KPNA6O60684 536 aa13□□□□□ -0.33
DDX41-216ENST00000513562 ICAM1P05362 532 aa13□□□□□ -0.33
DDX41-216ENST00000513562 TSPY3P0CV98 308 aa13□□□□□ -0.33
DDX41-216ENST00000513562 TSPY8P0CW00 308 aa13□□□□□ -0.33
DDX41-216ENST00000513562 MCCP23508 829 aa13□□□□□ -0.33
DDX41-216ENST00000513562 TDO2P48775 406 aa13□□□□□ -0.33
DDX41-216ENST00000513562 SNAP25P60880 206 aa13□□□□□ -0.33
DDX41-216ENST00000513562 ERVK-21P61565 698 aa13□□□□□ -0.33
DDX41-216ENST00000513562 NHLH1Q02575 133 aa13□□□□□ -0.33
DDX41-216ENST00000513562 GPNMBQ14956 572 aa13□□□□□ -0.33
DDX41-216ENST00000513562 BRDTQ58F21 947 aaPredicted RBP13□□□□□ -0.33
DDX41-216ENST00000513562 KCTD1Q719H9 257 aa13□□□□□ -0.33
DDX41-216ENST00000513562 TMCO2Q7Z6W1 182 aaPredicted RBP13□□□□□ -0.33
DDX41-216ENST00000513562 CAGE1Q8TC20 777 aa13□□□□□ -0.33
DDX41-216ENST00000513562 AFAP1L1Q8TED9 768 aa13□□□□□ -0.33
DDX41-216ENST00000513562 PPP1R13LQ8WUF5 828 aa13□□□□□ -0.33
DDX41-216ENST00000513562 APPBP2Q92624 585 aa13□□□□□ -0.33
DDX41-216ENST00000513562 KCNH6Q9H252 994 aa13□□□□□ -0.33
DDX41-216ENST00000513562 CCPG1Q9ULG6 757 aa13□□□□□ -0.33
DDX41-216ENST00000513562 NKRFO15226 690 aaKnown RBP eCLIP12.99□□□□□ -0.33
DDX41-216ENST00000513562 GPAA1O43292 621 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 GJB5O95377 273 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 IL9P15248 144 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 GNAT2P19087 354 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 KCNA5P22460 613 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 SSTR3P32745 418 aaPredicted RBP12.99□□□□□ -0.33
DDX41-216ENST00000513562 DEFB103AP81534 67 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 TFAP4Q01664 338 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 BAATQ14032 418 aaPredicted RBP12.99□□□□□ -0.33
DDX41-216ENST00000513562 PPP2R5BQ15173 497 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 RCSD1Q6JBY9 416 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 RASGRP2Q7LDG7 609 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 CCDC155Q8N6L0 562 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 KBTBD3Q8NAB2 608 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 TGS1Q96RS0 853 aaKnown RBP12.99□□□□□ -0.33
DDX41-216ENST00000513562 CTAGE1Q96RT6 745 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 RAD9AQ99638 391 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 ZBED2Q9BTP6 218 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 RANBP17Q9H2T7 1088 aaKnown RBP12.99□□□□□ -0.33
DDX41-216ENST00000513562 MTUS1Q9ULD2 1270 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 NOD1Q9Y239 953 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 TANC1Q9C0D5 1861 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 WDFY4Q6ZS81 3184 aa12.99□□□□□ -0.33
DDX41-216ENST00000513562 LINC01553A4QN01 128 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 GRXCR2A6NFK2 248 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 NFIBO00712 420 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 CXCL10P02778 98 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 PDE4BQ07343 736 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 PTGISQ16647 500 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 PPP4R3BQ5MIZ7 849 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms