RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 ICA1Q05084 483 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 FMR1Q06787 632 aaKnown RBP eCLIP12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 SPAG1Q07617 926 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 RRP1BQ14684 758 aaKnown RBP12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 TEX35Q5T0J7 233 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 OGFOD1Q8N543 542 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 RABGGTAQ92696 567 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 CARD6Q9BX69 1037 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 TMEM60Q9H2L4 133 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 C6orf50Q9HD87 102 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 FHOD1Q9Y613 1164 aa12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 POTEB2H3BUK9 544 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 PNMA6AP0CW24 399 aaPredicted RBP12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 CASP1P29466 404 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 GNA11P29992 359 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 SEMA3FQ13275 785 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 DLGAP5Q15398 846 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 ABCB5Q2M3G0 1257 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 GPATCH4Q5T3I0 446 aaKnown RBP12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 SOGA3Q5TF21 947 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 CNGA4Q8IV77 575 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 CDAN1Q8IWY9 1227 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 NIM1KQ8IY84 436 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 KANSL2Q9H9L4 492 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 TMEM260Q9NX78 707 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 BIN2Q9UBW5 565 aaPredicted RBP12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 ZNRF3Q9ULT6 936 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 MRFAP1Q9Y605 127 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 ITIH6Q6UXX5 1313 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 USP17L10C9JJH3 530 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 GH2P01242 217 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 AFMP43652 599 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 LETM2Q2VYF4 491 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 TMEM179Q6ZVK1 233 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 FAM177A1Q8N128 213 aaPredicted RBP12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 REXO1Q8N1G1 1221 aaKnown RBP12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 ANKRD20A12PQ8NF67 263 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 PAGE5Q96GU1 130 aa12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 ZNF70Q9UC06 446 aaPredicted RBP12.38□□□□□ -0.43
SH3RF1-203ENST00000508685 CCNT1O60563 726 aaKnown RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 TUBBP07437 444 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 SLC1A4P43007 532 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 PPP2R3AQ06190 1150 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 CXCL9Q07325 125 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 TRIM14Q14142 442 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 NONOQ15233 471 aaKnown RBP eCLIP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 CDKAL1Q5VV42 579 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 ARL6IP4Q66PJ3 421 aaKnown RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 RSRC2Q7L4I2 434 aaKnown RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 CEP112Q8N8E3 955 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 STAMQ92783 540 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 GOLGA1Q92805 767 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 NUP88Q99567 741 aaPredicted RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 VEZTQ9HBM0 779 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 SAMSN1Q9NSI8 373 aaKnown RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 TMOD2Q9NZR1 351 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 NYAP2Q9P242 653 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 HDAC9Q9UKV0 1011 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 CNTNAP1P78357 1384 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 PNMA6FA0A0J9YX94 578 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 ESYT2A0FGR8 921 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 SHTN1A0MZ66 631 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 PP2D1A8MPX8 630 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 KIF5CO60282 957 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 PBX1P40424 430 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 ADKP55263 362 aaKnown RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 DPYDQ12882 1025 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 CUL4BQ13620 913 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 ARHGAP27Q6ZUM4 889 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 KRT25Q7Z3Z0 450 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 IQUBQ8NA54 791 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 TBCKQ8TEA7 893 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 MKL1Q969V6 931 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 RMND1Q9NWS8 449 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 ADD3Q9UEY8 706 aaKnown RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 SCAF8Q9UPN6 1271 aaKnown RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 SYNRGQ9UMZ2 1314 aa12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 COL2A1P02458 1487 aaPredicted RBP12.37□□□□□ -0.43
SH3RF1-203ENST00000508685 BRCA1P38398 1863 aaKnown RBP12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 LRRC10BA6NIK2 292 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 hCG_1984214I3L0E3 225 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 ZBTB5O15062 677 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 FECHP22830 423 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 ADCY7P51828 1080 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 BRD3Q15059 726 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 E2F4Q16254 413 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 SPDYE2Q495Y8 402 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 SLFN13Q68D06 897 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 TMTC1Q8IUR5 882 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 ZNF713Q8N859 430 aaPredicted RBP12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 IGSF22Q8N9C0 903 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 KIFC2Q96AC6 838 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 TMEM39BQ9GZU3 492 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 TAOK3Q9H2K8 898 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 MYO1AQ9UBC5 1043 aa12.36□□□□□ -0.43
SH3RF1-203ENST00000508685 A0A1W2PRG0 241 aa12.35□□□□□ -0.43
SH3RF1-203ENST00000508685 F5H6K3 240 aa12.35□□□□□ -0.43
SH3RF1-203ENST00000508685 NFKBIEO00221 500 aa12.35□□□□□ -0.43
SH3RF1-203ENST00000508685 YY1P25490 414 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms