RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 CTCFLQ8NI51 663 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-209ENST00000506630 JAKMIP1Q96N16 626 aaKnown RBP15.25■□□□□ 0.03
TCOF1-209ENST00000506630 TTYH1Q9H313 450 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-209ENST00000506630 DIS3Q9Y2L1 958 aaKnown RBP15.25■□□□□ 0.03
TCOF1-209ENST00000506630 SNX14Q9Y5W7 946 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 UNC80Q8N2C7 3258 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 DNAJC25-GNG10A0A024R161 153 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 LIFRP42702 1097 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 TLE2Q04725 743 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 QRICH1Q2TAL8 776 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 DHX32Q7L7V1 743 aaKnown RBP15.24■□□□□ 0.03
TCOF1-209ENST00000506630 SH3RF1Q7Z6J0 888 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 RAB11FIP4Q86YS3 637 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 KCNB2Q92953 911 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 RNPC3Q96LT9 517 aaKnown RBP15.24■□□□□ 0.03
TCOF1-209ENST00000506630 TINF2Q9BSI4 451 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 PNMA2Q9UL42 364 aa15.24■□□□□ 0.03
TCOF1-209ENST00000506630 TRIM43BA6NCK2 446 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 NFIBO00712 420 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 EPB41L2O43491 1005 aaKnown RBP15.23■□□□□ 0.03
TCOF1-209ENST00000506630 HMGB1P09429 215 aaKnown RBP15.23■□□□□ 0.03
TCOF1-209ENST00000506630 CPA1P15085 419 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 RXRAP19793 462 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 CNTN2Q02246 1040 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 HOMER1Q86YM7 354 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 CCDC144CPQ8IYA2 1237 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 TRIM43Q96BQ3 446 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-209ENST00000506630 JMJD4Q9H9V9 463 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 SLC12A7Q9Y666 1083 aa15.23■□□□□ 0.03
TCOF1-209ENST00000506630 ABCB11O95342 1321 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 KIAA1217Q5T5P2 1943 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 PTPDC1A2A3K4 754 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 CLTBP09497 229 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 RARBP10826 455 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 RAG1P15918 1043 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 KIF5BP33176 963 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 IRX5P78411 483 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-209ENST00000506630 FGD1P98174 961 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 EXOSC10Q01780 885 aaKnown RBP15.22■□□□□ 0.03
TCOF1-209ENST00000506630 BLOC1S2Q6QNY1 142 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 RNF180Q86T96 592 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 MICU3Q86XE3 530 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 FBXO11Q86XK2 927 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 LENG1Q96BZ8 264 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-209ENST00000506630 MAP3K14Q99558 947 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 USP26Q9BXU7 913 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 XPNPEP3Q9NQH7 507 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 CYP39A1Q9NYL5 469 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 NRBP1Q9UHY1 535 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 PHF24Q9UPV7 400 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 CNPY2Q9Y2B0 182 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 LTBP2Q14767 1821 aa15.22■□□□□ 0.03
TCOF1-209ENST00000506630 SYNGAP1Q96PV0 1343 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 ATXN8OSP0DMR3 200 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 CALM1P0DP23 149 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 CALM2P0DP24 149 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 CALM3P0DP25 149 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 CASTP20810 708 aaKnown RBP15.21■□□□□ 0.03
TCOF1-209ENST00000506630 PSMA5P28066 241 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 BAATQ14032 418 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-209ENST00000506630 SLC30A10Q6XR72 485 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 SYNE3Q6ZMZ3 975 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 ZNF467Q7Z7K2 595 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-209ENST00000506630 SGMS1Q86VZ5 419 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 MSL3Q8N5Y2 521 aaKnown RBP15.21■□□□□ 0.03
TCOF1-209ENST00000506630 FAM133AQ8N9E0 248 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 CLEC4DQ8WXI8 215 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 PIBF1Q8WXW3 757 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 FGD4Q96M96 766 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 AMNQ9BXJ7 453 aa15.21■□□□□ 0.03
TCOF1-209ENST00000506630 DDX49Q9Y6V7 483 aaKnown RBP15.21■□□□□ 0.03
TCOF1-209ENST00000506630 ZBTB5O15062 677 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 CYTH3O43739 400 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 PLEKHA8P1O95397 391 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 CALML3P27482 149 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 FPGSQ05932 587 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 SLC35G1Q2M3R5 365 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 RNF207Q6ZRF8 634 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 Q6ZUG5 572 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 ARMCX2Q7L311 632 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 MTMR8Q96EF0 704 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 PIGSQ96S52 555 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 RIOX1Q9H6W3 641 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 TMEM39AQ9NV64 488 aa15.2■□□□□ 0.02
TCOF1-209ENST00000506630 ZHX1Q9UKY1 873 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-209ENST00000506630 NAP1L2Q9ULW6 460 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-209ENST00000506630 KLF18A0A0U1RQI7 1052 aa15.19■□□□□ 0.02
TCOF1-209ENST00000506630 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-209ENST00000506630 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-209ENST00000506630 SOWAHBA6NEL2 793 aa15.19■□□□□ 0.02
TCOF1-209ENST00000506630 KIAA0355O15063 1070 aa15.19■□□□□ 0.02
TCOF1-209ENST00000506630 PQBP1O60828 265 aaKnown RBP15.19■□□□□ 0.02
TCOF1-209ENST00000506630 ZNF865P0CJ78 1059 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-209ENST00000506630 RPS6KB1P23443 525 aa15.19■□□□□ 0.02
TCOF1-209ENST00000506630 GNAQP50148 359 aa15.19■□□□□ 0.02
TCOF1-209ENST00000506630 TJAP1Q5JTD0 557 aa15.19■□□□□ 0.02
TCOF1-209ENST00000506630 APOA5Q6Q788 366 aa15.19■□□□□ 0.02
TCOF1-209ENST00000506630 MAMDC4Q6UXC1 1216 aa15.19■□□□□ 0.02
TCOF1-209ENST00000506630 PURBQ96QR8 312 aaKnown RBP15.19■□□□□ 0.02
TCOF1-209ENST00000506630 LZTS2Q9BRK4 669 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms