RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 USH1GQ495M9 461 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 MUM1L1Q5H9M0 696 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 FBXO46Q6PJ61 603 aaPredicted RBP13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 RGS22Q8NE09 1264 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 CLEC4DQ8WXI8 215 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 MRPL11Q9Y3B7 192 aaKnown RBP13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 PCDHA1Q9Y5I3 950 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 FRMPD3Q5JV73 1810 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 PFASO15067 1338 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 PRPF3O43395 683 aaKnown RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 COBLO75128 1261 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 TAL1P17542 331 aaPredicted RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 PSEN1P49768 467 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 SCRN1Q12765 414 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 CPLX2Q6PUV4 134 aaKnown RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 ANKRD35Q8N283 1001 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 RAET1EQ8TD07 263 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 PIBF1Q8WXW3 757 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 DDX11Q96FC9 970 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 ZSCAN31Q96LW9 406 aaPredicted RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 RNF26Q9BY78 433 aaPredicted RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 A1CFQ9NQ94 594 aaKnown RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 SLC5A4Q9NY91 659 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 RBM27Q9P2N5 1060 aaKnown RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 DIS3Q9Y2L1 958 aaKnown RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 PTCH2Q9Y6C5 1203 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 V9GY48 417 aaPredicted RBP13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 LRRC37A2A6NM11 1700 aa13.76□□□□□ -0.21
PDLIM5-208ENST00000504489 HTTP42858 3142 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 hCG_1642624A0A1W2PR95 340 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 NFIBO00712 420 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 CPLX1O14810 134 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 LARGE1O95461 756 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 CYP2B6P20813 491 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 MCM2P49736 904 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 ZNF792Q3KQV3 632 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 NOL8Q76FK4 1167 aaKnown RBP13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 DPP9Q86TI2 863 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 TRMT44Q8IYL2 757 aaKnown RBP13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 SAMD3Q8N6K7 520 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 PXYLP1Q8TE99 480 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 GTF3C6Q969F1 213 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 APBA2Q99767 749 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 SH2B1Q9NRF2 756 aaPredicted RBP13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 CYP39A1Q9NYL5 469 aa13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 KIAA0100Q14667 2235 aaKnown RBP13.75□□□□□ -0.21
PDLIM5-208ENST00000504489 CENPFP49454 3210 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 hCG_1984214I3L0E3 225 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 OPLAHO14841 1288 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 ADCY3O60266 1144 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 CDKL5O76039 1030 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 AKAP17AQ02040 695 aaKnown RBP13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 GHRHRQ02643 423 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 SSRP1Q08945 709 aaKnown RBP13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 PDAP1Q13442 181 aaKnown RBP13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 PFKFB3Q16875 520 aaPredicted RBP13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 COL13A1Q5TAT6 717 aaPredicted RBP13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 NSMFQ6X4W1 530 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 MCF2L2Q86YR7 1114 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 TRIM22Q8IYM9 498 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 ZNF713Q8N859 430 aaPredicted RBP13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 NECAB1Q8N987 351 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 FAM133AQ8N9E0 248 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 SLAIN1Q8ND83 568 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 NPLOC4Q8TAT6 608 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 PHKBQ93100 1093 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 MCOLN1Q9GZU1 580 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 SCUBE2Q9NQ36 999 aa13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 MAP3K20Q9NYL2 800 aaKnown RBP13.74□□□□□ -0.21
PDLIM5-208ENST00000504489 CTDNEP1O95476 244 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 IGHA2P01877 340 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 PGK2P07205 417 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 SCG2P13521 617 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 GRK4P32298 578 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 BAATQ14032 418 aaPredicted RBP13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 PKN1Q16512 942 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 OLFML2BQ68BL8 750 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 RNF207Q6ZRF8 634 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 SLC26A6Q9BXS9 759 aa13.73□□□□□ -0.21
PDLIM5-208ENST00000504489 STK36Q9NRP7 1315 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 PTPDC1A2A3K4 754 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 CD2BP2O95400 341 aaKnown RBP13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 DEXIO95424 95 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 HSD17B4P51659 736 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 RPS6P62753 249 aaKnown RBP13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 ST3GAL1Q11201 340 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 CCL14Q16627 93 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 WWC2Q6AWC2 1192 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 PPP1R18Q6NYC8 613 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 HEATR3Q7Z4Q2 680 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 TEX2Q8IWB9 1127 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 TBC1D5Q92609 795 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 MAML3Q96JK9 1138 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 BARHL2Q9NY43 387 aa13.72□□□□□ -0.21
PDLIM5-208ENST00000504489 LOC102724159A0A0B4J2E5 919 aa13.71□□□□□ -0.21
PDLIM5-208ENST00000504489 SOWAHBA6NEL2 793 aa13.71□□□□□ -0.21
PDLIM5-208ENST00000504489 STXBP3O00186 592 aa13.71□□□□□ -0.21
PDLIM5-208ENST00000504489 HMGCRP04035 888 aa13.71□□□□□ -0.21
PDLIM5-208ENST00000504489 ELNP15502 786 aa13.71□□□□□ -0.21
PDLIM5-208ENST00000504489 CNTN2Q02246 1040 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms