RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TRIM9Q9C026 710 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 VAT1LQ9HCJ6 419 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 ARGLU1Q9NWB6 273 aaPredicted RBP13.43□□□□□ -0.26
NUP54-202ENST00000502850 GDAQ9Y2T3 454 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 ADAMTSL1Q8N6G6 1762 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 PP2D1A8MPX8 630 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 LGALS16A8MUM7 142 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 KIF5CO60282 957 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 FGFR1OPO95684 399 aaKnown RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 GYPCP04921 128 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 CCNE1P24864 410 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 SHMT1P34896 483 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 ASIC1P78348 528 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 TSR1Q2NL82 804 aaKnown RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 JAKMIP3Q5VZ66 844 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 STYK1Q6J9G0 422 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 CDC42EP5Q6NZY7 148 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 TOGARAM2Q6ZUX3 1019 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 RASGRP2Q7LDG7 609 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 DCAF4Q8WV16 495 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 NUP58Q9BVL2 599 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 GPBP1L1Q9HC44 474 aaPredicted RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 FRMPD2Q68DX3 1309 aaPredicted RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 PVALEFA0A1B0GWK0 134 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 EFCAB8A8MWE9 144 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 F8W031 263 aaPredicted RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 URI1O94763 535 aaPredicted RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 CDC25AP30304 524 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 CHRNA5P30532 468 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 CASP14P31944 242 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 CRKP46108 304 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 DNM2P50570 870 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 TUBB4BP68371 445 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 UBXN1Q04323 297 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 PDE4DQ08499 809 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 SEPT2Q15019 361 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 CCDC96Q2M329 555 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 DALRD3Q5D0E6 543 aaKnown RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 STRIP1Q5VSL9 837 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 FOXR2Q6PJQ5 311 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 SV2BQ7L1I2 683 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 RETREG2Q8NC44 543 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 UBXN4Q92575 508 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 P2RX5Q93086 422 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 MTMR9Q96QG7 549 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 NUP88Q99567 741 aaPredicted RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 TRIM34Q9BYJ4 488 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 UBA5Q9GZZ9 404 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 VPS16Q9H269 839 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 CPVLQ9H3G5 476 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 DDX4Q9NQI0 724 aaKnown RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 ABHD10Q9NUJ1 306 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 TAB2Q9NYJ8 693 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 MYO1AQ9UBC5 1043 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 BIN2Q9UBW5 565 aaPredicted RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 LRWD1Q9UFC0 647 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 ADGRG1Q9Y653 693 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 KDM3AQ9Y4C1 1321 aa13.42□□□□□ -0.26
NUP54-202ENST00000502850 COL2A1P02458 1487 aaPredicted RBP13.42□□□□□ -0.26
NUP54-202ENST00000502850 ZBTB5O15062 677 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 TECP42680 631 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 ELF2Q15723 593 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 KRT79Q5XKE5 535 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 APOBEC3HQ6NTF7 200 aaKnown RBP13.41□□□□□ -0.26
NUP54-202ENST00000502850 POTEDQ86YR6 584 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 TEX2Q8IWB9 1127 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 ZNF526Q8TF50 670 aaPredicted RBP13.41□□□□□ -0.26
NUP54-202ENST00000502850 UBE2Q2Q8WVN8 375 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 MTMR8Q96EF0 704 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 JMJD4Q9H9V9 463 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 GPCPD1Q9NPB8 672 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 OGFRQ9NZT2 677 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 ABCB11O95342 1321 aa13.41□□□□□ -0.26
NUP54-202ENST00000502850 ZNF646O15015 1829 aaPredicted RBP13.41□□□□□ -0.26
NUP54-202ENST00000502850 SIPA1L1O43166 1804 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 MPHOSPH10O00566 681 aaKnown RBP13.4□□□□□ -0.26
NUP54-202ENST00000502850 PSMD2Q13200 908 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 PTPN21Q16825 1174 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 TTI2Q6NXR4 508 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 UNC13DQ70J99 1090 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 ADGRF4Q8IZF3 695 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 CSGALNACT2Q8N6G5 542 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 IDI2Q9BXS1 227 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 KANSL2Q9H9L4 492 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 NYAP2Q9P242 653 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 PI4KBQ9UBF8 816 aa13.4□□□□□ -0.26
NUP54-202ENST00000502850 SOWAHDA6NJG2 315 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 TXKP42681 527 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 TNNI2P48788 182 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 CLK2P49760 499 aaKnown RBP13.39□□□□□ -0.27
NUP54-202ENST00000502850 MAP3K9P80192 1104 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 DOK7Q18PE1 504 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 ARHGAP29Q52LW3 1261 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 MB21D1Q8N884 522 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 CPLX3Q8WVH0 158 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 LARP4BQ92615 738 aaKnown RBP13.39□□□□□ -0.27
NUP54-202ENST00000502850 MKL1Q969V6 931 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 NT5C3AQ9H0P0 336 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 SERPINA10Q9UK55 444 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 SYNPO2Q9UMS6 1093 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms