RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CCDC89Q8N998 374 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 RNF217Q8TC41 542 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 RIN2Q8WYP3 895 aaPredicted RBP5.74□□□□□ -1.49
USP54-216ENST00000498143 HYPKQ9NX55 129 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 PCDHA11Q9Y5I1 949 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 MRFAP1Q9Y605 127 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 RPS6KL1Q9Y6S9 549 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L15C9J2P7 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L13C9JLJ4 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L11C9JVI0 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L18D6R9N7 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L22D6RA61 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L17D6RBQ6 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L19D6RCP7 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L20D6RJB6 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 DYNC1LI2O43237 492 aaPredicted RBP5.74□□□□□ -1.49
USP54-216ENST00000498143 RNF8O76064 485 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 CSF2RAP15509 400 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 CYP2C18P33260 490 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 TPD52P55327 224 aaPredicted RBP5.74□□□□□ -1.49
USP54-216ENST00000498143 USP17L24Q0WX57 530 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 LPAL2Q16609 132 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 PPM1JQ5JR12 505 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 FRMD5Q7Z6J6 570 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 CCDC112Q8NEF3 446 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 CELF1Q92879 486 aaKnown RBP5.74□□□□□ -1.49
USP54-216ENST00000498143 DCBLD2Q96PD2 775 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 TACO1Q9BSH4 297 aaKnown RBP5.74□□□□□ -1.49
USP54-216ENST00000498143 SUFUQ9UMX1 484 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 NWD2Q9ULI1 1742 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 POTEB2H3BUK9 544 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 AVPR2P30518 371 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 INPP5BP32019 993 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 NAALADL2Q58DX5 795 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 CCDC70Q6NSX1 233 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 SLC39A5Q6ZMH5 540 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 TTLL7Q6ZT98 887 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 SDCCAG8Q86SQ7 713 aaPredicted RBP5.74□□□□□ -1.49
USP54-216ENST00000498143 CAGE1Q8TC20 777 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 IFIH1Q9BYX4 1025 aaKnown RBP5.74□□□□□ -1.49
USP54-216ENST00000498143 LRRCC1Q9C099 1032 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 IL23AQ9NPF7 189 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 OGFRQ9NZT2 677 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 CHD2O14647 1828 aaKnown RBP5.74□□□□□ -1.49
USP54-216ENST00000498143 BRWD3Q6RI45 1802 aa5.74□□□□□ -1.49
USP54-216ENST00000498143 NCOR2Q9Y618 2525 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 CLTCL1P53675 1640 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 KCNA2P16389 499 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 RNASELQ05823 741 aaKnown RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 NOLC1Q14978 699 aaKnown RBP eCLIP5.73□□□□□ -1.49
USP54-216ENST00000498143 HLFQ16534 295 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 TMC7Q7Z402 723 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 AMIGO3Q86WK7 504 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 TEX11Q8IYF3 940 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 C10orf67Q8IYJ2 551 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 KLHL23Q8NBE8 558 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 PPFIBP2Q8ND30 876 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 SEPT8Q92599 483 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 STAMQ92783 540 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 UNC45AQ9H3U1 944 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 MAP10Q9P2G4 905 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 DBF4Q9UBU7 674 aaPredicted RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 PCDHB12Q9Y5F1 795 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 RFXAPO00287 272 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 HOXA2O43364 376 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 CHMP2AO43633 222 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 ZFXP17010 805 aaPredicted RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 RSPO4Q2I0M5 234 aaPredicted RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 DNAJC21Q5F1R6 531 aaKnown RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 NSMFQ6X4W1 530 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 NFXL1Q6ZNB6 911 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 TRIM67Q6ZTA4 783 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 TAOK1Q7L7X3 1001 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 SCYL3Q8IZE3 742 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 C7orf31Q8N865 590 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 SPIRE2Q8WWL2 714 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 PHKBQ93100 1093 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 FAM193BQ96PV7 902 aaPredicted RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 C11orf84Q9BUA3 381 aaPredicted RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 MXD3Q9BW11 206 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 ABCC6O95255 1503 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 ABCA12Q86UK0 2595 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 CCDC189A1A4V9 331 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 NR1I2O75469 434 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 MRPL28Q13084 256 aaKnown RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 CEP128Q6ZU80 1094 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 RUBCNLQ9H714 662 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 CFAP45Q9UL16 551 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 RWDD3Q9Y3V2 267 aa5.73□□□□□ -1.49
USP54-216ENST00000498143 EIF2AK4Q9P2K8 1649 aaKnown RBP5.73□□□□□ -1.49
USP54-216ENST00000498143 PFKMP08237 780 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 MECOMQ03112 1051 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 SF3B3Q15393 1217 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 LMBR1LQ6UX01 489 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 GSDMBQ8TAX9 411 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.72□□□□□ -1.49
USP54-216ENST00000498143 TRIM4Q9C037 500 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 RABL2AQ9UBK7 228 aaPredicted RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 EVLQ9UI08 416 aaPredicted RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 ITGB1BP2Q9UKP3 347 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms