RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 MUM1L1Q5H9M0 696 aa19.65■□□□□ 0.74
VIM-208ENST00000497849 GDPD5Q8WTR4 605 aa19.65■□□□□ 0.74
VIM-208ENST00000497849 PPP1R13LQ8WUF5 828 aa19.65■□□□□ 0.74
VIM-208ENST00000497849 POLR3EQ9NVU0 708 aa19.65■□□□□ 0.74
VIM-208ENST00000497849 CYP39A1Q9NYL5 469 aa19.65■□□□□ 0.74
VIM-208ENST00000497849 LMCD1Q9NZU5 365 aa19.65■□□□□ 0.74
VIM-208ENST00000497849 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.64■□□□□ 0.73
VIM-208ENST00000497849 PITPNM1O00562 1244 aa19.64■□□□□ 0.73
VIM-208ENST00000497849 TTLL1O95922 423 aa19.64■□□□□ 0.73
VIM-208ENST00000497849 ALAS1P13196 640 aa19.64■□□□□ 0.73
VIM-208ENST00000497849 MRE11P49959 708 aa19.64■□□□□ 0.73
VIM-208ENST00000497849 STAT2P52630 851 aa19.64■□□□□ 0.73
VIM-208ENST00000497849 FAM178BQ8IXR5 827 aa19.64■□□□□ 0.73
VIM-208ENST00000497849 GJD3Q8N144 294 aa19.64■□□□□ 0.73
VIM-208ENST00000497849 FTOQ9C0B1 505 aaKnown RBP eCLIP19.64■□□□□ 0.73
VIM-208ENST00000497849 MYL3P08590 195 aa19.63■□□□□ 0.73
VIM-208ENST00000497849 HNRNPUQ00839 825 aaKnown RBP eCLIP19.63■□□□□ 0.73
VIM-208ENST00000497849 NBPF20Q3BBV1 942 aa19.63■□□□□ 0.73
VIM-208ENST00000497849 GIMAP6Q6P9H5 292 aa19.63■□□□□ 0.73
VIM-208ENST00000497849 TMCO2Q7Z6W1 182 aaPredicted RBP19.63■□□□□ 0.73
VIM-208ENST00000497849 ZNF444Q8N0Y2 327 aaPredicted RBP19.63■□□□□ 0.73
VIM-208ENST00000497849 STAG1Q8WVM7 1258 aa19.63■□□□□ 0.73
VIM-208ENST00000497849 MTG1Q9BT17 334 aaPredicted RBP19.63■□□□□ 0.73
VIM-208ENST00000497849 UBE2ZQ9H832 354 aaPredicted RBP19.63■□□□□ 0.73
VIM-208ENST00000497849 BAIAP3O94812 1187 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 SNAP25P60880 206 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 FAM47CQ5HY64 1035 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 ZSCAN25Q6NSZ9 544 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 FAM160B2Q86V87 743 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 RETREG2Q8NC44 543 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.62■□□□□ 0.73
VIM-208ENST00000497849 CHURC1Q8WUH1 139 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 CHMP4CQ96CF2 233 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 WDR11Q9BZH6 1224 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 SUGCTQ9HAC7 445 aa19.62■□□□□ 0.73
VIM-208ENST00000497849 EPB41L4AQ9HCS5 686 aaPredicted RBP19.62■□□□□ 0.73
VIM-208ENST00000497849 PLIN4Q96Q06 1357 aa19.61■□□□□ 0.73
VIM-208ENST00000497849 SIP14410 1827 aa19.61■□□□□ 0.73
VIM-208ENST00000497849 IL9P15248 144 aa19.61■□□□□ 0.73
VIM-208ENST00000497849 CPT1AP50416 773 aa19.61■□□□□ 0.73
VIM-208ENST00000497849 GPNMBQ14956 572 aa19.61■□□□□ 0.73
VIM-208ENST00000497849 LEXMQ3ZCV2 418 aa19.61■□□□□ 0.73
VIM-208ENST00000497849 NFRKBQ6P4R8 1299 aa19.61■□□□□ 0.73
VIM-208ENST00000497849 SIRT2Q8IXJ6 389 aa19.61■□□□□ 0.73
VIM-208ENST00000497849 ISY1Q9ULR0 285 aaKnown RBP19.61■□□□□ 0.73
VIM-208ENST00000497849 RBM47A0AV96 593 aaKnown RBP19.6■□□□□ 0.73
VIM-208ENST00000497849 WDR5P61964 334 aaKnown RBP19.6■□□□□ 0.73
VIM-208ENST00000497849 NHLH1Q02575 133 aa19.6■□□□□ 0.73
VIM-208ENST00000497849 NSMFQ6X4W1 530 aa19.6■□□□□ 0.73
VIM-208ENST00000497849 NEDD1Q8NHV4 660 aa19.6■□□□□ 0.73
VIM-208ENST00000497849 GMCL1Q96IK5 515 aa19.6■□□□□ 0.73
VIM-208ENST00000497849 PLA2G6O60733 806 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 MCCP23508 829 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 SLC1A4P43007 532 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 KCNJ6P48051 423 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 DEFB103AP81534 67 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 IKQ13123 557 aaPredicted RBP19.59■□□□□ 0.73
VIM-208ENST00000497849 BFSP2Q13515 415 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 OR6J1Q8NGC5 347 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 OSBP2Q969R2 916 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 UIMC1Q96RL1 719 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 GPHNQ9NQX3 736 aaPredicted RBP19.59■□□□□ 0.73
VIM-208ENST00000497849 MTUS1Q9ULD2 1270 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 PRR12Q9ULL5 1215 aa19.59■□□□□ 0.73
VIM-208ENST00000497849 RAB11FIP3O75154 756 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 ALADP13716 330 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 KCNA5P22460 613 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 ALDH5A1P51649 535 aaPredicted RBP19.58■□□□□ 0.72
VIM-208ENST00000497849 ERVK-21P61565 698 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 PTPN11Q06124 597 aaPredicted RBP19.58■□□□□ 0.72
VIM-208ENST00000497849 KCTD1Q719H9 257 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 RASGRP2Q7LDG7 609 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 PANK1Q8TE04 598 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 YTHDC1Q96MU7 727 aaKnown RBP19.58■□□□□ 0.72
VIM-208ENST00000497849 CTAGE1Q96RT6 745 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 ZNF287Q9HBT7 754 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 ZNF318Q5VUA4 2279 aa19.58■□□□□ 0.72
VIM-208ENST00000497849 A6NJR5 290 aa19.57■□□□□ 0.72
VIM-208ENST00000497849 RBAK-RBAKDNI3L0D1 243 aa19.57■□□□□ 0.72
VIM-208ENST00000497849 TSPY3P0CV98 308 aa19.57■□□□□ 0.72
VIM-208ENST00000497849 TSPY8P0CW00 308 aa19.57■□□□□ 0.72
VIM-208ENST00000497849 SSTR3P32745 418 aaPredicted RBP19.57■□□□□ 0.72
VIM-208ENST00000497849 BAATQ14032 418 aaPredicted RBP19.57■□□□□ 0.72
VIM-208ENST00000497849 SNX27Q96L92 541 aa19.57■□□□□ 0.72
VIM-208ENST00000497849 FBXL18Q96ME1 805 aa19.57■□□□□ 0.72
VIM-208ENST00000497849 ZBED2Q9BTP6 218 aa19.57■□□□□ 0.72
VIM-208ENST00000497849 CCPG1Q9ULG6 757 aa19.57■□□□□ 0.72
VIM-208ENST00000497849 LINC01553A4QN01 128 aa19.56■□□□□ 0.72
VIM-208ENST00000497849 GJB5O95377 273 aa19.56■□□□□ 0.72
VIM-208ENST00000497849 TDO2P48775 406 aa19.56■□□□□ 0.72
VIM-208ENST00000497849 TFAP4Q01664 338 aa19.56■□□□□ 0.72
VIM-208ENST00000497849 TCTN1Q2MV58 587 aa19.56■□□□□ 0.72
VIM-208ENST00000497849 LRRFIP1Q32MZ4 808 aaKnown RBP19.56■□□□□ 0.72
VIM-208ENST00000497849 PTCRAQ6ISU1 281 aaPredicted RBP19.56■□□□□ 0.72
VIM-208ENST00000497849 COPS5Q92905 334 aa19.56■□□□□ 0.72
VIM-208ENST00000497849 TGS1Q96RS0 853 aaKnown RBP19.56■□□□□ 0.72
VIM-208ENST00000497849 ADD3Q9UEY8 706 aaKnown RBP19.56■□□□□ 0.72
VIM-208ENST00000497849 LOC102724159A0A0B4J2E5 919 aa19.55■□□□□ 0.72
VIM-208ENST00000497849 GRXCR2A6NFK2 248 aa19.55■□□□□ 0.72
VIM-208ENST00000497849 GPAA1O43292 621 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms