RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ATG3Q9NT62 314 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 BRD1O95696 1058 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 MAN1A1P33908 653 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 HHATQ5VTY9 493 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 GJA10Q969M2 543 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 CCDC51Q96ER9 411 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 PARP2Q9UGN5 583 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 BRINP3Q76B58 766 aa14.4□□□□□ -0.11
PTPRF-215ENST00000496447 CARD6Q9BX69 1037 aa14.4□□□□□ -0.11
PTPRF-215ENST00000496447 SPDYE16A6NNV3 312 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-215ENST00000496447 TBC1D8O95759 1140 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 SPDYE2Q495Y8 402 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 SYDE2Q5VT97 1194 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 LCORLQ8N3X6 602 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 CLIC6Q96NY7 704 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 PIM2Q9P1W9 311 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 INO80B-WBP1J3KQ70 363 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 POLR2BP30876 1174 aaKnown RBP14.39□□□□□ -0.11
PTPRF-215ENST00000496447 CUL4BQ13620 913 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 PPFIBP2Q8ND30 876 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 SLC10A4Q96EP9 437 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 INO80BQ9C086 356 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-215ENST00000496447 XPO4Q9C0E2 1151 aaKnown RBP14.39□□□□□ -0.11
PTPRF-215ENST00000496447 CCDC160A6NGH7 325 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 LAD1O00515 517 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 IFNB1P01574 187 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 KRT15P19012 456 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 CDHR1Q96JP9 859 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 COA1Q9GZY4 146 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 SCRN1Q12765 414 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 PAK2Q13177 524 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 OR8K1Q8NGG5 319 aa14.39□□□□□ -0.11
PTPRF-215ENST00000496447 RNF26Q9BY78 433 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-215ENST00000496447 C21orf2O43822 256 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 ZWINTO95229 277 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 ADKP55263 362 aaKnown RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 BRD3Q15059 726 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 SUSD4Q5VX71 490 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 PIGSQ96S52 555 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 WDR11Q9BZH6 1224 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 ANTXR1Q9H6X2 564 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 PRKAB2O43741 272 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 TRIML1Q8N9V2 468 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 HAUS1Q96CS2 278 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 GCC2Q8IWJ2 1684 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 ERVK-7P63135 1459 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 POLR2FP61218 127 aaKnown RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 DIXDC1Q155Q3 683 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 ZNF827Q17R98 1081 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 CFAP57Q96MR6 1250 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 MAGEF1Q9HAY2 307 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 DISC1Q9NRI5 854 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 SAMD9LQ8IVG5 1584 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 KIF3CO14782 793 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 ATP8B1O43520 1251 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 FMNL1O95466 1100 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 RBBP5Q15291 538 aaKnown RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 EXOC8Q8IYI6 725 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 RNF168Q8IYW5 571 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 MAP4K1Q92918 833 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 SPATS2LQ9NUQ6 558 aaKnown RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 BSDC1Q9NW68 430 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 CLASP1Q7Z460 1538 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 SYNJ2BP-COX16A0A087WUM0 186 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 hCG_1984214I3L0E3 225 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 I3L4J1 428 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 APOA5Q6Q788 366 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 ZNF713Q8N859 430 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 RASGRP4Q8TDF6 673 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 LSG1Q9H089 658 aaKnown RBP14.38□□□□□ -0.11
PTPRF-215ENST00000496447 COX16Q9P0S2 106 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 SEPT10Q9P0V9 454 aa14.38□□□□□ -0.11
PTPRF-215ENST00000496447 RPS6KA4O75676 772 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 ZSCAN20P17040 1043 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-215ENST00000496447 RNASELQ05823 741 aaKnown RBP14.37□□□□□ -0.11
PTPRF-215ENST00000496447 RUFY4Q6ZNE9 571 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 ANKRD36BP1Q96IX9 119 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 AFF2P51816 1311 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 USP17L8P0C7I0 530 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 SH3BGRP55822 239 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-215ENST00000496447 EEPD1Q7L9B9 569 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 CTAGE3PQ8IX95 158 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 PGBD1Q96JS3 809 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 RAB17Q9H0T7 212 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 VCXQ9H320 206 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 STAP2Q9UGK3 403 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 RRP15Q9Y3B9 282 aaKnown RBP14.37□□□□□ -0.11
PTPRF-215ENST00000496447 PRR36Q9H6K5 1346 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 PCK1P35558 622 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 TRAPPC10P48553 1259 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 MYL7Q01449 175 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 PI16Q6UXB8 463 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 LARP4BQ92615 738 aaKnown RBP14.37□□□□□ -0.11
PTPRF-215ENST00000496447 STMN2Q93045 179 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 GPR101Q96P66 508 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-215ENST00000496447 KMT5AQ9NQR1 393 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 PCDHA7Q9UN72 937 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 METTL23Q86XA0 190 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 NME8Q8N427 588 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 ATP2A3Q93084 1043 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms