RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 TLK2Q86UE8 772 aa14.89□□□□□ -0.03
PTPRF-214ENST00000496043 FBXO16Q8IX29 292 aaPredicted RBP14.89□□□□□ -0.03
PTPRF-214ENST00000496043 DNERQ8NFT8 737 aa14.89□□□□□ -0.03
PTPRF-214ENST00000496043 CPVLQ9H3G5 476 aa14.89□□□□□ -0.03
PTPRF-214ENST00000496043 DDX49Q9Y6V7 483 aaKnown RBP14.89□□□□□ -0.03
PTPRF-214ENST00000496043 SGSM2O43147 1006 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 DHX16O60231 1041 aaKnown RBP14.88□□□□□ -0.03
PTPRF-214ENST00000496043 PDE4DQ08499 809 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 CDC37Q16543 378 aaPredicted RBP14.88□□□□□ -0.03
PTPRF-214ENST00000496043 FSCN1Q16658 493 aaKnown RBP14.88□□□□□ -0.03
PTPRF-214ENST00000496043 USH1GQ495M9 461 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 DUSP28Q4G0W2 176 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 SLC30A10Q6XR72 485 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 CYB5R4Q7L1T6 521 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 DEFB123Q8N688 67 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 SEZ6LQ9BYH1 1024 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 WDR11Q9BZH6 1224 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 ABCB11O95342 1321 aa14.88□□□□□ -0.03
PTPRF-214ENST00000496043 RANBP2P49792 3224 aaKnown RBP14.87□□□□□ -0.03
PTPRF-214ENST00000496043 RBM47A0AV96 593 aaKnown RBP14.87□□□□□ -0.03
PTPRF-214ENST00000496043 ERICH2A1L162 156 aa14.87□□□□□ -0.03
PTPRF-214ENST00000496043 TLR3O15455 904 aaKnown RBP14.87□□□□□ -0.03
PTPRF-214ENST00000496043 CYP21A2P08686 494 aa14.87□□□□□ -0.03
PTPRF-214ENST00000496043 ITGB8P26012 769 aa14.87□□□□□ -0.03
PTPRF-214ENST00000496043 SEC23AQ15436 765 aa14.87□□□□□ -0.03
PTPRF-214ENST00000496043 CXCL17Q6UXB2 119 aa14.87□□□□□ -0.03
PTPRF-214ENST00000496043 FBXO11Q86XK2 927 aa14.87□□□□□ -0.03
PTPRF-214ENST00000496043 MCF2L2Q86YR7 1114 aa14.87□□□□□ -0.03
PTPRF-214ENST00000496043 JMJD4Q9H9V9 463 aa14.87□□□□□ -0.03
PTPRF-214ENST00000496043 MRPL11Q9Y3B7 192 aaKnown RBP14.87□□□□□ -0.03
PTPRF-214ENST00000496043 KLRF2D3W0D1 207 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 IFIT3O14879 490 aaKnown RBP14.86□□□□□ -0.03
PTPRF-214ENST00000496043 TIMP1P01033 207 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 FPGSQ05932 587 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 QRICH1Q2TAL8 776 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 C9orf50Q5SZB4 431 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 TMEM63BQ5T3F8 832 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 RALYLQ86SE5 291 aaKnown RBP14.86□□□□□ -0.03
PTPRF-214ENST00000496043 NCOA7Q8NI08 942 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 TBC1D5Q92609 795 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 MAP4K1Q92918 833 aa14.86□□□□□ -0.03
PTPRF-214ENST00000496043 E7EWF7 191 aa14.85□□□□□ -0.03
PTPRF-214ENST00000496043 NKRFO15226 690 aaKnown RBP eCLIP14.85□□□□□ -0.03
PTPRF-214ENST00000496043 EDNRBP24530 442 aa14.85□□□□□ -0.03
PTPRF-214ENST00000496043 ITGA7Q13683 1181 aa14.85□□□□□ -0.03
PTPRF-214ENST00000496043 SART3Q15020 963 aaKnown RBP14.85□□□□□ -0.03
PTPRF-214ENST00000496043 FAM109BQ6ICB4 259 aaPredicted RBP14.85□□□□□ -0.03
PTPRF-214ENST00000496043 Q7L0L9 218 aa14.85□□□□□ -0.03
PTPRF-214ENST00000496043 STAG2Q8N3U4 1231 aa14.85□□□□□ -0.03
PTPRF-214ENST00000496043 SLC43A3Q8NBI5 491 aa14.85□□□□□ -0.03
PTPRF-214ENST00000496043 MCM3APO60318 1980 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 PALM3A6NDB9 673 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-214ENST00000496043 PTGS1P23219 599 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 WTAPQ15007 396 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 BRDTQ58F21 947 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-214ENST00000496043 MFSD5Q6N075 450 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 FAM126BQ8IXS8 530 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 SYTL5Q8TDW5 730 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-214ENST00000496043 NSUN6Q8TEA1 469 aaKnown RBP14.84□□□□□ -0.03
PTPRF-214ENST00000496043 SCFD2Q8WU76 684 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 TAAR1Q96RJ0 339 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 AMNQ9BXJ7 453 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 GPHNQ9NQX3 736 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-214ENST00000496043 POLR3EQ9NVU0 708 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 MTMR10Q9NXD2 777 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 MAD2L2Q9UI95 211 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 TBX21Q9UL17 535 aa14.84□□□□□ -0.03
PTPRF-214ENST00000496043 CD4P01730 458 aa14.83□□□□□ -0.04
PTPRF-214ENST00000496043 TXNP10599 105 aaKnown RBP14.83□□□□□ -0.04
PTPRF-214ENST00000496043 CPT1AP50416 773 aa14.83□□□□□ -0.04
PTPRF-214ENST00000496043 TRAF1Q13077 416 aa14.83□□□□□ -0.04
PTPRF-214ENST00000496043 TMEM199Q8N511 208 aa14.83□□□□□ -0.04
PTPRF-214ENST00000496043 OR6J1Q8NGC5 347 aa14.83□□□□□ -0.04
PTPRF-214ENST00000496043 IWS1Q96ST2 819 aa14.83□□□□□ -0.04
PTPRF-214ENST00000496043 RBM8AQ9Y5S9 174 aaKnown RBP14.83□□□□□ -0.04
PTPRF-214ENST00000496043 ZBTB5O15062 677 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 KPNA6O60684 536 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 MYL3P08590 195 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 EPHB4P54760 987 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 SMAD3P84022 425 aaKnown RBP14.82□□□□□ -0.04
PTPRF-214ENST00000496043 PPIGQ13427 754 aaKnown RBP eCLIP14.82□□□□□ -0.045e-7■■□□□ 13.4
PTPRF-214ENST00000496043 TTLL4Q14679 1199 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 PPP2R5BQ15173 497 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 STXBP2Q15833 593 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 TMEM67Q5HYA8 995 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 ARHGEF16Q5VV41 709 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 CHST3Q7LGC8 479 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 CATIPQ7Z7H3 387 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 SAMD3Q8N6K7 520 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 MTMR8Q96EF0 704 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 RNPC3Q96LT9 517 aaKnown RBP14.82□□□□□ -0.04
PTPRF-214ENST00000496043 RMDN3Q96TC7 470 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 MAP3K20Q9NYL2 800 aaKnown RBP14.82□□□□□ -0.04
PTPRF-214ENST00000496043 PCDHA1Q9Y5I3 950 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 GRIN2DO15399 1336 aa14.82□□□□□ -0.04
PTPRF-214ENST00000496043 CFBP00751 764 aa14.81□□□□□ -0.04
PTPRF-214ENST00000496043 PSMC6P62333 389 aa14.81□□□□□ -0.04
PTPRF-214ENST00000496043 GRM4Q14833 912 aa14.81□□□□□ -0.04
PTPRF-214ENST00000496043 STOX1Q6ZVD7 989 aa14.81□□□□□ -0.04
PTPRF-214ENST00000496043 IGDCC4Q8TDY8 1250 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms