RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 RGS22Q8NE09 1264 aa22.46■■□□□ 1.19
HDAC4-212ENST00000495497 TINF2Q9BSI4 451 aa22.46■■□□□ 1.19
HDAC4-212ENST00000495497 SLKQ9H2G2 1235 aaPredicted RBP22.46■■□□□ 1.19
HDAC4-212ENST00000495497 ASTN1O14525 1302 aa22.46■■□□□ 1.19
HDAC4-212ENST00000495497 PFKFB2O60825 505 aa22.45■■□□□ 1.18
HDAC4-212ENST00000495497 CCND3P30281 292 aaPredicted RBP22.45■■□□□ 1.18
HDAC4-212ENST00000495497 MAP3K21Q5TCX8 1036 aa22.45■■□□□ 1.18
HDAC4-212ENST00000495497 WWC2Q6AWC2 1192 aa22.45■■□□□ 1.18
HDAC4-212ENST00000495497 HEATR3Q7Z4Q2 680 aa22.45■■□□□ 1.18
HDAC4-212ENST00000495497 MCF2L2Q86YR7 1114 aa22.45■■□□□ 1.18
HDAC4-212ENST00000495497 NECAB1Q8N987 351 aa22.45■■□□□ 1.18
HDAC4-212ENST00000495497 TRPV1Q8NER1 839 aa22.45■■□□□ 1.18
HDAC4-212ENST00000495497 IFNAR1P17181 557 aa22.44■■□□□ 1.18
HDAC4-212ENST00000495497 HOXA13P31271 388 aaPredicted RBP22.44■■□□□ 1.18
HDAC4-212ENST00000495497 TRAF1Q13077 416 aa22.44■■□□□ 1.18
HDAC4-212ENST00000495497 RABEP1Q15276 862 aa22.44■■□□□ 1.18
HDAC4-212ENST00000495497 SYTL5Q8TDW5 730 aaPredicted RBP22.44■■□□□ 1.18
HDAC4-212ENST00000495497 SLC26A6Q9BXS9 759 aa22.44■■□□□ 1.18
HDAC4-212ENST00000495497 RNF208Q9H0X6 261 aa22.44■■□□□ 1.18
HDAC4-212ENST00000495497 COL20A1Q9P218 1284 aa22.44■■□□□ 1.18
HDAC4-212ENST00000495497 PRPF3O43395 683 aaKnown RBP22.43■■□□□ 1.18
HDAC4-212ENST00000495497 CAPN15O75808 1086 aa22.43■■□□□ 1.18
HDAC4-212ENST00000495497 SNAI1O95863 264 aaPredicted RBP22.43■■□□□ 1.18
HDAC4-212ENST00000495497 SOX10P56693 466 aa22.43■■□□□ 1.18
HDAC4-212ENST00000495497 ZNF467Q7Z7K2 595 aaPredicted RBP22.43■■□□□ 1.18
HDAC4-212ENST00000495497 TAAR1Q96RJ0 339 aa22.43■■□□□ 1.18
HDAC4-212ENST00000495497 RPTORQ8N122 1335 aa22.42■■□□□ 1.18
HDAC4-212ENST00000495497 MYH6P13533 1939 aa22.42■■□□□ 1.18
HDAC4-212ENST00000495497 CPLX1O14810 134 aa22.42■■□□□ 1.18
HDAC4-212ENST00000495497 HSD17B4P51659 736 aa22.42■■□□□ 1.18
HDAC4-212ENST00000495497 PKN1Q16512 942 aa22.42■■□□□ 1.18
HDAC4-212ENST00000495497 TYW1BQ6NUM6 668 aa22.42■■□□□ 1.18
HDAC4-212ENST00000495497 MAMDC4Q6UXC1 1216 aa22.42■■□□□ 1.18
HDAC4-212ENST00000495497 ARMCX2Q7L311 632 aa22.42■■□□□ 1.18
HDAC4-212ENST00000495497 HMX1Q9NP08 348 aaPredicted RBP22.42■■□□□ 1.18
HDAC4-212ENST00000495497 POTEFA5A3E0 1075 aa22.41■■□□□ 1.18
HDAC4-212ENST00000495497 CYBAP13498 195 aa22.41■■□□□ 1.18
HDAC4-212ENST00000495497 ALDH5A1P51649 535 aaPredicted RBP22.41■■□□□ 1.18
HDAC4-212ENST00000495497 PFKFB3Q16875 520 aaPredicted RBP22.41■■□□□ 1.18
HDAC4-212ENST00000495497 TMEM106CQ9BVX2 250 aa22.41■■□□□ 1.18
HDAC4-212ENST00000495497 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.41■■□□□ 1.185e-6■■■■□ 22.5
HDAC4-212ENST00000495497 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.41■■□□□ 1.18
HDAC4-212ENST00000495497 PLXNA1Q9UIW2 1896 aa22.41■■□□□ 1.18
HDAC4-212ENST00000495497 SYNGAP1Q96PV0 1343 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 GCOM1H8Y6P7 765 aaPredicted RBP22.4■■□□□ 1.18
HDAC4-212ENST00000495497 STXBP3O00186 592 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 POLR2MP0CAP2 368 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 CNGA1P29973 690 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 NAPAP54920 295 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 AKAP17AQ02040 695 aaKnown RBP22.4■■□□□ 1.18
HDAC4-212ENST00000495497 GHRHRQ02643 423 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 SSRP1Q08945 709 aaKnown RBP22.4■■□□□ 1.18
HDAC4-212ENST00000495497 USP17L6PQ6QN14 398 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 MSL3Q8N5Y2 521 aaKnown RBP22.4■■□□□ 1.18
HDAC4-212ENST00000495497 GTF3C6Q969F1 213 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 RNF26Q9BY78 433 aaPredicted RBP22.4■■□□□ 1.18
HDAC4-212ENST00000495497 LIMCH1Q9UPQ0 1083 aa22.4■■□□□ 1.18
HDAC4-212ENST00000495497 LCTP09848 1927 aa22.39■■□□□ 1.18
HDAC4-212ENST00000495497 ASB14A6NK59 587 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 CD2BP2O95400 341 aaKnown RBP22.39■■□□□ 1.17
HDAC4-212ENST00000495497 CTDNEP1O95476 244 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 SCG2P13521 617 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 ST3GAL1Q11201 340 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 EEPD1Q7L9B9 569 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 FCHSD1Q86WN1 690 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 DEFB118Q96PH6 123 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 MAF1Q9H063 256 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 PAK6Q9NQU5 681 aaPredicted RBP22.39■■□□□ 1.17
HDAC4-212ENST00000495497 BARHL2Q9NY43 387 aa22.39■■□□□ 1.17
HDAC4-212ENST00000495497 ADD3Q9UEY8 706 aaKnown RBP22.39■■□□□ 1.17
HDAC4-212ENST00000495497 ZHX1Q9UKY1 873 aaPredicted RBP22.39■■□□□ 1.17
HDAC4-212ENST00000495497 MEIS2O14770 477 aa22.38■■□□□ 1.17
HDAC4-212ENST00000495497 ZNF865P0CJ78 1059 aaPredicted RBP22.38■■□□□ 1.17
HDAC4-212ENST00000495497 UBE2SQ16763 222 aa22.38■■□□□ 1.17
HDAC4-212ENST00000495497 CPLX2Q6PUV4 134 aaKnown RBP22.38■■□□□ 1.17
HDAC4-212ENST00000495497 PSTPIP2Q9H939 334 aa22.38■■□□□ 1.17
HDAC4-212ENST00000495497 CNPY2Q9Y2B0 182 aa22.38■■□□□ 1.17
HDAC4-212ENST00000495497 EIF2AK2P19525 551 aaKnown RBP22.37■■□□□ 1.17
HDAC4-212ENST00000495497 ACVR2BQ13705 512 aa22.37■■□□□ 1.17
HDAC4-212ENST00000495497 ANO1Q5XXA6 986 aa22.37■■□□□ 1.17
HDAC4-212ENST00000495497 TRIM22Q8IYM9 498 aa22.37■■□□□ 1.17
HDAC4-212ENST00000495497 DNERQ8NFT8 737 aa22.37■■□□□ 1.17
HDAC4-212ENST00000495497 SHISA4Q96DD7 197 aa22.37■■□□□ 1.17
HDAC4-212ENST00000495497 AIFM3Q96NN9 605 aa22.37■■□□□ 1.17
HDAC4-212ENST00000495497 RMDN3Q96TC7 470 aa22.37■■□□□ 1.17
HDAC4-212ENST00000495497 KATNBL1Q9H079 304 aa22.37■■□□□ 1.17
HDAC4-212ENST00000495497 MAP3K20Q9NYL2 800 aaKnown RBP22.37■■□□□ 1.17
HDAC4-212ENST00000495497 SMCO2A6NFE2 343 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 hCG_1984214I3L0E3 225 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 ST18O60284 1047 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 GJB1P08034 283 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 EN2P19622 333 aaPredicted RBP22.36■■□□□ 1.17
HDAC4-212ENST00000495497 ARHGEF16Q5VV41 709 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 CCDC83Q8IWF9 413 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 FBXO16Q8IX29 292 aaPredicted RBP22.36■■□□□ 1.17
HDAC4-212ENST00000495497 SAMD3Q8N6K7 520 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 ZNF713Q8N859 430 aaPredicted RBP22.36■■□□□ 1.17
HDAC4-212ENST00000495497 SMARCC2Q8TAQ2 1214 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 MORC4Q8TE76 937 aa22.36■■□□□ 1.17
HDAC4-212ENST00000495497 U2AF1L4Q8WU68 220 aaKnown RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms