RNA–Protein interactions for RNA: ENST00000495232.5

CSNK1E-213, Transcript of casein kinase 1 epsilon, human

TSL 2

Gene CSNK1E, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSNK1E-213	ENST00000495232	TRIM22	Q8IYM9	498 aa		13.95	□□□□□ -0.18
CSNK1E-213	ENST00000495232	FAM133A	Q8N9E0	248 aa		13.95	□□□□□ -0.18
CSNK1E-213	ENST00000495232	NCOA5	Q9HCD5	579 aa	Known RBP	13.95	□□□□□ -0.18
CSNK1E-213	ENST00000495232	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.95	□□□□□ -0.18
CSNK1E-213	ENST00000495232	MAP3K20	Q9NYL2	800 aa	Known RBP	13.95	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CNPY2	Q9Y2B0	182 aa		13.95	□□□□□ -0.18
CSNK1E-213	ENST00000495232	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ST18	O60284	1047 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CDKL5	O76039	1030 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	POLR2M	P0CAP2	368 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CNGA1	P29973	690 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	TRIM32	Q13049	653 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SLC30A10	Q6XR72	485 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SAMD3	Q8N6K7	520 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	IL27	Q8NEV9	243 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CUL5	Q93034	780 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	TBC1D32	Q96NH3	1257 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	TPCN1	Q9ULQ1	816 aa		13.94	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SYNGAP1	Q96PV0	1343 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	hCG_1984214	I3L0E3	225 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CAPN15	O75808	1086 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	IFNAR1	P17181	557 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	NAPA	P54920	295 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SSRP1	Q08945	709 aa	Known RBP	13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	FUT2	Q10981	343 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	MAMDC4	Q6UXC1	1216 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ZNF713	Q8N859	430 aa	Predicted RBP	13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	DNER	Q8NFT8	737 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PHKB	Q93100	1093 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	KIF2C	Q99661	725 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SLC26A6	Q9BXS9	759 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	RNF26	Q9BY78	433 aa	Predicted RBP	13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	UNC93B1	Q9H1C4	597 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	NRBP1	Q9UHY1	535 aa		13.93	□□□□□ -0.18
CSNK1E-213	ENST00000495232	LOC102724159	A0A0B4J2E5	919 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SOWAHB	A6NEL2	793 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PRPF3	O43395	683 aa	Known RBP	13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PFKFB2	O60825	505 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ALDH5A1	P51649	535 aa	Predicted RBP	13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PWP2	Q15269	919 aa	Known RBP	13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	MAP3K21	Q5TCX8	1036 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ARHGEF16	Q5VV41	709 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ARMCX2	Q7L311	632 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SMARCC2	Q8TAQ2	1214 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	TBC1D5	Q92609	795 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.92	□□□□□ -0.18	2e-6	■■□□□ 13
CSNK1E-213	ENST00000495232	RMDN3	Q96TC7	470 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PSTPIP2	Q9H939	334 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	LIMCH1	Q9UPQ0	1083 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	BRCA2	P51587	3418 aa		13.92	□□□□□ -0.18
CSNK1E-213	ENST00000495232	MSC	O60682	206 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	GJB1	P08034	283 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CYBA	P13498	195 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SCG2	P13521	617 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CCND3	P30281	292 aa	Predicted RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	HOXA13	P31271	388 aa	Predicted RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	HSD17B4	P51659	736 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SOX10	P56693	466 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PDE4D	Q08499	809 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SCRN1	Q12765	414 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	NTRK3	Q16288	839 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PFKFB3	Q16875	520 aa	Predicted RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PRAMEF19	Q5SWL8	479 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	WWC2	Q6AWC2	1192 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PPP1R18	Q6NYC8	613 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	FCHSD1	Q86WN1	690 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	NSUN6	Q8TEA1	469 aa	Known RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	DEFB118	Q96PH6	123 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PURB	Q96QR8	312 aa	Known RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ABHD16B	Q9H3Z7	469 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PAK6	Q9NQU5	681 aa	Predicted RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	BARHL2	Q9NY43	387 aa		13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.91	□□□□□ -0.18
CSNK1E-213	ENST00000495232	OPLAH	O14841	1288 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	PPFIA3	O75145	1194 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	DEXI	O95424	95 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	TFRC	P02786	760 aa	Known RBP	13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	CAPN2	P17655	700 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ACVR2B	Q13705	512 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	ME3	Q16798	604 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	NECAB1	Q8N987	351 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	FGD4	Q96M96	766 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	TAAR1	Q96RJ0	339 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	IWS1	Q96ST2	819 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	GLT8D2	Q9H1C3	349 aa		13.9	□□□□□ -0.18
CSNK1E-213	ENST00000495232	SMCO2	A6NFE2	343 aa		13.89	□□□□□ -0.19
CSNK1E-213	ENST00000495232	SPDYE3	A6NKU9	549 aa		13.89	□□□□□ -0.19
CSNK1E-213	ENST00000495232	STXBP3	O00186	592 aa		13.89	□□□□□ -0.19
CSNK1E-213	ENST00000495232	SEPT4	O43236	478 aa		13.89	□□□□□ -0.19
CSNK1E-213	ENST00000495232	SGPL1	O95470	568 aa		13.89	□□□□□ -0.19
CSNK1E-213	ENST00000495232	SNAI1	O95863	264 aa	Predicted RBP	13.89	□□□□□ -0.19
CSNK1E-213	ENST00000495232	IGHA2	P01877	340 aa		13.89	□□□□□ -0.19
CSNK1E-213	ENST00000495232	AKR1A1	P14550	325 aa		13.89	□□□□□ -0.19
CSNK1E-213	ENST00000495232	GJA8	P48165	433 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms