RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 NOD1Q9Y239 953 aa11.35□□□□□ -0.59
UBR4-216ENST00000494503 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.35□□□□□ -0.59
UBR4-216ENST00000494503 SLC4A7Q9Y6M7 1214 aa11.35□□□□□ -0.59
UBR4-216ENST00000494503 RAD50Q92878 1312 aa11.35□□□□□ -0.59
UBR4-216ENST00000494503 NFIBO00712 420 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 CD4P01730 458 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 TOP1P11387 765 aaKnown RBP11.34□□□□□ -0.59
UBR4-216ENST00000494503 CYP2C9P11712 490 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 CPT1AP50416 773 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 ALDH5A1P51649 535 aaPredicted RBP11.34□□□□□ -0.59
UBR4-216ENST00000494503 PDE4DQ08499 809 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 PPP2R5BQ15173 497 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 USH1GQ495M9 461 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 TAPT1Q6NXT6 567 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 SLC30A10Q6XR72 485 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 RNF207Q6ZRF8 634 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 RPUSD2Q8IZ73 545 aaKnown RBP11.34□□□□□ -0.59
UBR4-216ENST00000494503 PPP1R13LQ8WUF5 828 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 HERVK_113Q902F9 699 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 RILPL2Q969X0 211 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 EVI5LQ96CN4 794 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 NOC4LQ9BVI4 516 aaKnown RBP11.34□□□□□ -0.59
UBR4-216ENST00000494503 TRMT13Q9NUP7 481 aaKnown RBP11.34□□□□□ -0.59
UBR4-216ENST00000494503 POLR3EQ9NVU0 708 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 THEGQ9P2T0 379 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 SCN5AQ14524 2016 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 MYH6P13533 1939 aa11.34□□□□□ -0.59
UBR4-216ENST00000494503 PLA2G6O60733 806 aa11.33□□□□□ -0.6
UBR4-216ENST00000494503 SUPT20HL2P0C7V6 817 aa11.33□□□□□ -0.6
UBR4-216ENST00000494503 FAM227BQ96M60 508 aa11.33□□□□□ -0.6
UBR4-216ENST00000494503 TMEM47Q9BQJ4 181 aa11.33□□□□□ -0.6
UBR4-216ENST00000494503 FTOQ9C0B1 505 aaKnown RBP eCLIP11.33□□□□□ -0.65e-7■■□□□ 11.4
UBR4-216ENST00000494503 WNT8AQ9H1J5 351 aa11.33□□□□□ -0.6
UBR4-216ENST00000494503 ALDH8A1Q9H2A2 487 aaPredicted RBP11.33□□□□□ -0.6
UBR4-216ENST00000494503 TSPYL2Q9H2G4 693 aaPredicted RBP11.33□□□□□ -0.6
UBR4-216ENST00000494503 RANBP17Q9H2T7 1088 aaKnown RBP11.33□□□□□ -0.6
UBR4-216ENST00000494503 YBX2Q9Y2T7 364 aaKnown RBP11.33□□□□□ -0.6
UBR4-216ENST00000494503 TCF20Q9UGU0 1960 aaKnown RBP11.33□□□□□ -0.6
UBR4-216ENST00000494503 GRIN2DO15399 1336 aa11.33□□□□□ -0.6
UBR4-216ENST00000494503 TNKSO95271 1327 aa11.33□□□□□ -0.6
UBR4-216ENST00000494503 NCOR1O75376 2440 aa11.33□□□□□ -0.6
UBR4-216ENST00000494503 A0A0D9SFI3 127 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 TNFRSF10AO00220 468 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 FOXP2O15409 715 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 ORC4O43929 436 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 DHX16O60231 1041 aaKnown RBP11.32□□□□□ -0.6
UBR4-216ENST00000494503 MYOGP15173 224 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 ATP2A2P16615 1042 aaKnown RBP11.32□□□□□ -0.6
UBR4-216ENST00000494503 DUSP28Q4G0W2 176 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 MCMDC2Q4G0Z9 681 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 RASIP1Q5U651 963 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 MFSD6Q6ZSS7 791 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 SLC43A3Q8NBI5 491 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 MTG1Q9BT17 334 aaPredicted RBP11.32□□□□□ -0.6
UBR4-216ENST00000494503 SEZ6LQ9BYH1 1024 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 CERS4Q9HA82 394 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 HELLSQ9NRZ9 838 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 Q9Y3F1 56 aa11.32□□□□□ -0.6
UBR4-216ENST00000494503 TRIP12Q14669 1992 aaPredicted RBP11.32□□□□□ -0.6
UBR4-216ENST00000494503 SPTBN5Q9NRC6 3674 aaKnown RBP11.31□□□□□ -0.6
UBR4-216ENST00000494503 B4DLN1 442 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 FGAP02671 866 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 GOLGA8HP0CJ92 632 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 PDHBP11177 359 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 ACTN1P12814 892 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 MRPL12P52815 198 aaKnown RBP11.31□□□□□ -0.6
UBR4-216ENST00000494503 NKX3-2P78367 333 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 PURAQ00577 322 aaKnown RBP11.31□□□□□ -0.6
UBR4-216ENST00000494503 NMIQ13287 307 aaPredicted RBP11.31□□□□□ -0.6
UBR4-216ENST00000494503 ADGRE1Q14246 886 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 AKNAD1Q5T1N1 836 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 RETREG2Q8NC44 543 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 CRBNQ96SW2 442 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 ZKSCAN3Q9BRR0 538 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 ANAPC4Q9UJX5 808 aa11.31□□□□□ -0.6
UBR4-216ENST00000494503 PRRC2BQ5JSZ5 2229 aaKnown RBP11.3□□□□□ -0.6
UBR4-216ENST00000494503 TXNP10599 105 aaKnown RBP11.3□□□□□ -0.6
UBR4-216ENST00000494503 PDE1AP54750 535 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 RRP1P56182 461 aaKnown RBP11.3□□□□□ -0.6
UBR4-216ENST00000494503 RPS6P62753 249 aaKnown RBP11.3□□□□□ -0.6
UBR4-216ENST00000494503 MRPS5P82675 430 aaKnown RBP11.3□□□□□ -0.6
UBR4-216ENST00000494503 TTLL4Q14679 1199 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 NBPF20Q3BBV1 942 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 TMEM67Q5HYA8 995 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 B4GALNT3Q6L9W6 998 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 CHST3Q7LGC8 479 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 ZNF589Q86UQ0 364 aaPredicted RBP11.3□□□□□ -0.6
UBR4-216ENST00000494503 ADAMTS19Q8TE59 1207 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 SCFD2Q8WU76 684 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 ATXN2LQ8WWM7 1075 aaKnown RBP11.3□□□□□ -0.6
UBR4-216ENST00000494503 COPS5Q92905 334 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 ASB2Q96Q27 587 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 UHRF1Q96T88 793 aaPredicted RBP11.3□□□□□ -0.6
UBR4-216ENST00000494503 LNPKQ9C0E8 428 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 CCDC171Q6TFL3 1326 aa11.3□□□□□ -0.6
UBR4-216ENST00000494503 TANC1Q9C0D5 1861 aa11.29□□□□□ -0.6
UBR4-216ENST00000494503 GTPBP6O43824 516 aaPredicted RBP11.29□□□□□ -0.6
UBR4-216ENST00000494503 CA3P07451 260 aa11.29□□□□□ -0.6
UBR4-216ENST00000494503 PFKMP08237 780 aa11.29□□□□□ -0.6
UBR4-216ENST00000494503 HSPD1P10809 573 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms