RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 SYNGAP1Q96PV0 1343 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 COL11A2P13942 1736 aaPredicted RBP6.79□□□□□ -1.32
PTCD3-219ENST00000494323 MEGF11A6BM72 1044 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 FZD9O00144 591 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 WISP1O95388 367 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 CTSBP07858 339 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 FGRP09769 529 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 GARTP22102 1010 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 IARSP41252 1262 aaKnown RBP6.79□□□□□ -1.32
PTCD3-219ENST00000494323 FAM160A1Q05DH4 1040 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 PAK2Q13177 524 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 EXOSC6Q5RKV6 272 aaKnown RBP6.79□□□□□ -1.32
PTCD3-219ENST00000494323 FBXL19Q6PCT2 694 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 SLC51AQ86UW1 340 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 GOLM1Q8NBJ4 401 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 GATAD2BQ8WXI9 593 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 JDP2Q8WYK2 163 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 GAL3ST3Q96A11 431 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 SPATA32Q96LK8 384 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 CEP41Q9BYV8 373 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 ZC3H12CQ9C0D7 883 aaKnown RBP6.79□□□□□ -1.32
PTCD3-219ENST00000494323 RNF208Q9H0X6 261 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 CNTNAP1P78357 1384 aa6.79□□□□□ -1.32
PTCD3-219ENST00000494323 COL3A1P02461 1466 aaPredicted RBP6.79□□□□□ -1.32
PTCD3-219ENST00000494323 SIPA1L3O60292 1781 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-219ENST00000494323 GREM1O60565 184 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 SLFN14P0C7P3 912 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 MYL6BP14649 208 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 GPTP24298 496 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 PPP2R1AP30153 589 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 EPS15P42566 896 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 CTCFP49711 727 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-219ENST00000494323 GRM1Q13255 1194 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 SEPT6Q14141 434 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 KIF4BQ2VIQ3 1234 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 TTLL7Q6ZT98 887 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 KIAA1211Q6ZU35 1233 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 PNMA8AQ86V59 439 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-219ENST00000494323 RASGRP4Q8TDF6 673 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 GPBAR1Q8TDU6 330 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 JARID2Q92833 1246 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-219ENST00000494323 NT5C1AQ9BXI3 368 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 TMPRSS13Q9BYE2 586 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 ZFP64Q9NPA5 681 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 PRDM10Q9NQV6 1147 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 RAD18Q9NS91 495 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 ABT1Q9ULW3 272 aaKnown RBP6.78□□□□□ -1.32
PTCD3-219ENST00000494323 SCN4AP35499 1836 aa6.78□□□□□ -1.32
PTCD3-219ENST00000494323 WDR33Q9C0J8 1336 aaKnown RBP6.77□□□□□ -1.32
PTCD3-219ENST00000494323 FAM221AA4D161 298 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 ZNF862O60290 1169 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 AOC2O75106 756 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 BPNT1O95861 308 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 DLGAP3O95886 979 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 F13A1P00488 732 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 DNAJA1P31689 397 aaKnown RBP6.77□□□□□ -1.33
PTCD3-219ENST00000494323 EIF6P56537 245 aaKnown RBP6.77□□□□□ -1.33
PTCD3-219ENST00000494323 ARTNQ5T4W7 220 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 SUSD4Q5VX71 490 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 BNC2Q6ZN30 1099 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-219ENST00000494323 MCF2L2Q86YR7 1114 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 GPC2Q8N158 579 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 DHX38Q92620 1227 aaKnown RBP6.77□□□□□ -1.33
PTCD3-219ENST00000494323 RPGRQ92834 1020 aaKnown RBP6.77□□□□□ -1.33
PTCD3-219ENST00000494323 ARMC5Q96C12 935 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 GPRASP2Q96D09 838 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 THUMPD2Q9BTF0 503 aaKnown RBP6.77□□□□□ -1.33
PTCD3-219ENST00000494323 LRRC3Q9BY71 257 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 SUGCTQ9HAC7 445 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 CYP4F12Q9HCS2 524 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 DDX21Q9NR30 783 aaKnown RBP eCLIP6.77□□□□□ -1.33
PTCD3-219ENST00000494323 PCDHA4Q9UN74 947 aa6.77□□□□□ -1.33
PTCD3-219ENST00000494323 RASSF10A6NK89 507 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 TRAF5O00463 557 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 HTATSF1O43719 755 aaKnown RBP6.76□□□□□ -1.33
PTCD3-219ENST00000494323 CILPO75339 1184 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 LIG1P18858 919 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 ARID5AQ03989 594 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 PTPN11Q06124 597 aaPredicted RBP6.76□□□□□ -1.33
PTCD3-219ENST00000494323 APOBRQ0VD83 1088 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 LRP8Q14114 963 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 MPP2Q14168 576 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 CRY2Q49AN0 593 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 CST9Q5W186 159 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 ANKRD34AQ69YU3 496 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 VPS37DQ86XT2 251 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 KRTAP1-3Q8IUG1 177 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 SMG8Q8ND04 991 aaKnown RBP6.76□□□□□ -1.33
PTCD3-219ENST00000494323 EAF1Q96JC9 268 aaPredicted RBP6.76□□□□□ -1.33
PTCD3-219ENST00000494323 UBL7Q96S82 380 aaPredicted RBP6.76□□□□□ -1.33
PTCD3-219ENST00000494323 PSMD1Q99460 953 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 WDR18Q9BV38 432 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 NYXQ9GZU5 481 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 NPC1L1Q9UHC9 1359 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 SCN7AQ01118 1682 aa6.76□□□□□ -1.33
PTCD3-219ENST00000494323 ERVV-1B6SEH8 477 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 HSPA8P11142 646 aaKnown RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 ATF4P18848 351 aaPredicted RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 FSTP19883 344 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 EIF2S2P20042 333 aaKnown RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms