RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 ACAD9Q9H845 621 aa16.46■□□□□ 0.23
EXOSC3-207ENST00000490516 COG6Q9Y2V7 657 aa16.46■□□□□ 0.23
EXOSC3-207ENST00000490516 TCRBV5S4A2TA0A5A2 114 aa16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 USP17L12C9JPN9 530 aa16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 USP17L21D6R901 530 aa16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 BCAR3O75815 825 aa16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 RNF135Q8IUD6 432 aa16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 EDAQ92838 391 aa16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 PBXIP1Q96AQ6 731 aa16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 PABPC5Q96DU9 382 aaKnown RBP16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 MTG1Q9BT17 334 aaPredicted RBP16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 NLRC5Q86WI3 1866 aa16.45■□□□□ 0.22
EXOSC3-207ENST00000490516 MYO7AQ13402 2215 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 OAZ1P54368 228 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 SLFNL1Q499Z3 407 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 DUSP28Q4G0W2 176 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 TCEAL5Q5H9L2 206 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 BMP8AQ7Z5Y6 402 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 SSH3Q8TE77 659 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 PRRX2Q99811 253 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 ALG13Q9NP73 1137 aaKnown RBP16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 GPHNQ9NQX3 736 aaPredicted RBP16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 RNF146Q9NTX7 359 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 TNNQ9UQP3 1299 aa16.44■□□□□ 0.22
EXOSC3-207ENST00000490516 TMEM221A6NGB7 291 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 M0R296 226 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 LRRFIP1Q32MZ4 808 aaKnown RBP16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 NFRKBQ6P4R8 1299 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 CNKSR3Q6P9H4 555 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 BANK1Q8NDB2 785 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 PURBQ96QR8 312 aaKnown RBP16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 ATP8A2Q9NTI2 1148 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 CLDND1Q9NY35 253 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 CTNNA3Q9UI47 895 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 NOD1Q9Y239 953 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 PTPRZ1P23471 2315 aaPredicted RBP16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 MYO15AQ9UKN7 3530 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 DCHS1Q96JQ0 3298 aa16.43■□□□□ 0.22
EXOSC3-207ENST00000490516 MICAL3Q7RTP6 2002 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 MBD4O95243 580 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 CPT1AP50416 773 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 COL19A1Q14993 1142 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 TTF1Q15361 905 aaPredicted RBP16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 CLUL1Q15846 466 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 PTPROQ16827 1216 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 TIGD5Q53EQ6 642 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 TRIM67Q6ZTA4 783 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 WDR11Q9BZH6 1224 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 VTA1Q9NP79 307 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 NYAP2Q9P242 653 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 FEM1BQ9UK73 627 aa16.42■□□□□ 0.22
EXOSC3-207ENST00000490516 CACNA1HO95180 2353 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 NBNO60934 754 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 LTBRP36941 435 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 CHMP4BP1P59074 171 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 SMAD2Q15796 467 aaKnown RBP16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 SUGP1Q8IWZ8 645 aaKnown RBP16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 AMOTL1Q8IY63 956 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 OR6J1Q8NGC5 347 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 AFAP1L1Q8TED9 768 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 ARHGAP45Q92619 1136 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 CLIP2Q9UDT6 1046 aa16.41■□□□□ 0.22
EXOSC3-207ENST00000490516 ABHD14A-ACY1A0A1B0GW23 586 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 SELPP16109 830 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 ATP8B2P98198 1209 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 PTGISQ16647 500 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 EPC2Q52LR7 807 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 MUM1L1Q5H9M0 696 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 CTR9Q6PD62 1173 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 LRRC8DQ7L1W4 858 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 RPAINQ86UA6 219 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 STK11IPQ8N1F8 1099 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 ATOH1Q92858 354 aaPredicted RBP16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 TRERF1Q96PN7 1200 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 CTAGE1Q96RT6 745 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 POP1Q99575 1024 aaKnown RBP16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 COL4A6Q14031 1691 aa16.4■□□□□ 0.22
EXOSC3-207ENST00000490516 GOLIM4O00461 696 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 MBTPS2O43462 519 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 CXCL10P02778 98 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 ALAS1P13196 640 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 RASA1P20936 1047 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 PTPN11Q06124 597 aaPredicted RBP16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 DLX2Q07687 328 aaPredicted RBP16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 AACSQ86V21 672 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 FBXL6Q8N531 539 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 CCDC155Q8N6L0 562 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 CAGE1Q8TC20 777 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 MORC4Q8TE76 937 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 DHX38Q92620 1227 aaKnown RBP16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 NSUN3Q9H649 340 aaKnown RBP16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 CYP39A1Q9NYL5 469 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 NOP58Q9Y2X3 529 aaKnown RBP16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 INSL6Q9Y581 213 aa16.39■□□□□ 0.21
EXOSC3-207ENST00000490516 RARSP54136 660 aaKnown RBP16.38■□□□□ 0.21
EXOSC3-207ENST00000490516 VCPP55072 806 aaKnown RBP16.38■□□□□ 0.21
EXOSC3-207ENST00000490516 GPM6BQ13491 265 aa16.38■□□□□ 0.21
EXOSC3-207ENST00000490516 PKN1Q16512 942 aa16.38■□□□□ 0.21
EXOSC3-207ENST00000490516 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.38■□□□□ 0.217e-8■■□□□ 12.7
EXOSC3-207ENST00000490516 ERMP1Q7Z2K6 904 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms