RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 KBTBD13C9JR72 458 aa16.17■□□□□ 0.18
SYNE1-226ENST00000488376 CTAGE5O15320 804 aa16.17■□□□□ 0.18
SYNE1-226ENST00000488376 DDAH1O94760 285 aa16.17■□□□□ 0.18
SYNE1-226ENST00000488376 HSPA4P34932 840 aa16.17■□□□□ 0.18
SYNE1-226ENST00000488376 SYTL5Q8TDW5 730 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-226ENST00000488376 TAAR1Q96RJ0 339 aa16.17■□□□□ 0.18
SYNE1-226ENST00000488376 MTA3Q9BTC8 594 aa16.17■□□□□ 0.18
SYNE1-226ENST00000488376 BRPF3Q9ULD4 1205 aa16.17■□□□□ 0.18
SYNE1-226ENST00000488376 COLQQ9Y215 455 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-226ENST00000488376 SNX14Q9Y5W7 946 aa16.17■□□□□ 0.18
SYNE1-226ENST00000488376 CCDC69A6NI79 296 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 SMPD1P17405 629 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 LIFRP42702 1097 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 CCSAPQ6IQ19 270 aaPredicted RBP16.16■□□□□ 0.18
SYNE1-226ENST00000488376 SRBD1Q8N5C6 995 aaKnown RBP16.16■□□□□ 0.18
SYNE1-226ENST00000488376 RGS22Q8NE09 1264 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 KLHDC9Q8NEP7 349 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 AMNQ9BXJ7 453 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 PNMA2Q9UL42 364 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 PHF24Q9UPV7 400 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 PCDHA1Q9Y5I3 950 aa16.16■□□□□ 0.18
SYNE1-226ENST00000488376 hCG_1642624A0A1W2PR95 340 aa16.15■□□□□ 0.18
SYNE1-226ENST00000488376 DUSP11O75319 330 aaKnown RBP16.15■□□□□ 0.18
SYNE1-226ENST00000488376 EDNRBP24530 442 aa16.15■□□□□ 0.18
SYNE1-226ENST00000488376 BEX3Q00994 111 aa16.15■□□□□ 0.18
SYNE1-226ENST00000488376 TNFAIP2Q03169 654 aa16.15■□□□□ 0.18
SYNE1-226ENST00000488376 CHRDL2Q6WN34 429 aa16.15■□□□□ 0.18
SYNE1-226ENST00000488376 DHX32Q7L7V1 743 aaKnown RBP16.15■□□□□ 0.18
SYNE1-226ENST00000488376 SGMS1Q86VZ5 419 aa16.15■□□□□ 0.18
SYNE1-226ENST00000488376 MICU3Q86XE3 530 aa16.15■□□□□ 0.18
SYNE1-226ENST00000488376 JAKMIP1Q96N16 626 aaKnown RBP16.15■□□□□ 0.18
SYNE1-226ENST00000488376 UPF3AQ9H1J1 476 aaKnown RBP16.15■□□□□ 0.18
SYNE1-226ENST00000488376 ADD3Q9UEY8 706 aaKnown RBP16.15■□□□□ 0.18
SYNE1-226ENST00000488376 GNEQ9Y223 722 aaKnown RBP16.15■□□□□ 0.18
SYNE1-226ENST00000488376 MRPL11Q9Y3B7 192 aaKnown RBP16.15■□□□□ 0.18
SYNE1-226ENST00000488376 NR2E3Q9Y5X4 410 aa16.15■□□□□ 0.18
SYNE1-226ENST00000488376 PNMA6FA0A0J9YX94 578 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 A0A1W2PQ45 241 aaPredicted RBP16.14■□□□□ 0.17
SYNE1-226ENST00000488376 A0A1W2PQY0 241 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 CFBP00751 764 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 C6orf222P0C671 652 aaPredicted RBP16.14■□□□□ 0.17
SYNE1-226ENST00000488376 HOXA13P31271 388 aaPredicted RBP16.14■□□□□ 0.17
SYNE1-226ENST00000488376 RTP1P59025 263 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 KCNA10Q16322 511 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 TRIM60Q495X7 471 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 APOA5Q6Q788 366 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 SLC39A5Q6ZMH5 540 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 RNF180Q86T96 592 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 CTCFLQ8NI51 663 aaPredicted RBP16.14■□□□□ 0.17
SYNE1-226ENST00000488376 MAP3K14Q99558 947 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 SLC12A7Q9Y666 1083 aa16.14■□□□□ 0.17
SYNE1-226ENST00000488376 DNAH12Q6ZR08 3092 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 HSD17B4P51659 736 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 ACLYP53396 1101 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 GJA9P57773 515 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 PDE4DQ08499 809 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 NOL8Q76FK4 1167 aaKnown RBP16.13■□□□□ 0.17
SYNE1-226ENST00000488376 TLK2Q86UE8 772 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 TMTC2Q8N394 836 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 CCDC82Q8N4S0 544 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 DNERQ8NFT8 737 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 SPZ1Q9BXG8 430 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 VTA1Q9NP79 307 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 ATP11BQ9Y2G3 1177 aa16.13■□□□□ 0.17
SYNE1-226ENST00000488376 REC8O95072 547 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 ARIH2O95376 493 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 EIF2AK2P19525 551 aaKnown RBP16.12■□□□□ 0.17
SYNE1-226ENST00000488376 CST5P28325 142 aaPredicted RBP16.12■□□□□ 0.17
SYNE1-226ENST00000488376 KIF5BP33176 963 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 KRT32Q14532 448 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 SNX17Q15036 470 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 TMTC3Q6ZXV5 915 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 MCF2L2Q86YR7 1114 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 FANCBQ8NB91 859 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 IL31RAQ8NI17 732 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 COPS5Q92905 334 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 USP26Q9BXU7 913 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 PRO3102Q9H379 93 aa16.12■□□□□ 0.17
SYNE1-226ENST00000488376 RBM27Q9P2N5 1060 aaKnown RBP16.12■□□□□ 0.17
SYNE1-226ENST00000488376 KLF18A0A0U1RQI7 1052 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 RBM47A0AV96 593 aaKnown RBP16.11■□□□□ 0.17
SYNE1-226ENST00000488376 DYNC1LI2O43237 492 aaPredicted RBP16.11■□□□□ 0.17
SYNE1-226ENST00000488376 ASGR1P07306 291 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 GHRHRQ02643 423 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 APOBRQ0VD83 1088 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 HABP4Q5JVS0 413 aaKnown RBP16.11■□□□□ 0.17
SYNE1-226ENST00000488376 GNASQ5JWF2 1037 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 IQSEC1Q6DN90 963 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 Q6ZUG5 572 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 RRP36Q96EU6 259 aaKnown RBP16.11■□□□□ 0.17
SYNE1-226ENST00000488376 ZFP91Q96JP5 570 aaPredicted RBP16.11■□□□□ 0.17
SYNE1-226ENST00000488376 RMDN3Q96TC7 470 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 WDR11Q9BZH6 1224 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 PXMP2Q9NR77 195 aa16.11■□□□□ 0.17
SYNE1-226ENST00000488376 FAM217BQ9NTX9 383 aaPredicted RBP16.11■□□□□ 0.17
SYNE1-226ENST00000488376 CALM1P0DP23 149 aa16.1■□□□□ 0.17
SYNE1-226ENST00000488376 CALM2P0DP24 149 aa16.1■□□□□ 0.17
SYNE1-226ENST00000488376 CALM3P0DP25 149 aa16.1■□□□□ 0.17
SYNE1-226ENST00000488376 CDC27P30260 824 aa16.1■□□□□ 0.17
SYNE1-226ENST00000488376 NKX3-2P78367 333 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms