RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 TTC22Q5TAA0 569 aa28.77■■■□□ 2.2
LIME1-206ENST00000487026 ENAHQ8N8S7 591 aaPredicted RBP28.77■■■□□ 2.2
LIME1-206ENST00000487026 ANKS1AQ92625 1134 aa28.77■■■□□ 2.2
LIME1-206ENST00000487026 STXBP5LQ9Y2K9 1186 aa28.77■■■□□ 2.2
LIME1-206ENST00000487026 LAMA4Q16363 1823 aa28.76■■■□□ 2.19
LIME1-206ENST00000487026 RPS6P62753 249 aaKnown RBP28.76■■■□□ 2.19
LIME1-206ENST00000487026 RNPC3Q96LT9 517 aaKnown RBP28.76■■■□□ 2.19
LIME1-206ENST00000487026 GUCD1Q96NT3 240 aa28.76■■■□□ 2.19
LIME1-206ENST00000487026 WDR19Q8NEZ3 1342 aa28.75■■■□□ 2.19
LIME1-206ENST00000487026 FAM126BQ8IXS8 530 aa28.75■■■□□ 2.19
LIME1-206ENST00000487026 WDR11Q9BZH6 1224 aa28.75■■■□□ 2.19
LIME1-206ENST00000487026 PNMA2Q9UL42 364 aa28.75■■■□□ 2.19
LIME1-206ENST00000487026 TNKSO95271 1327 aa28.74■■■□□ 2.19
LIME1-206ENST00000487026 ZNF697Q5TEC3 545 aa28.74■■■□□ 2.19
LIME1-206ENST00000487026 PPP1R12CQ9BZL4 782 aa28.74■■■□□ 2.19
LIME1-206ENST00000487026 KRT23Q9C075 422 aa28.74■■■□□ 2.19
LIME1-206ENST00000487026 Q9Y3F1 56 aa28.74■■■□□ 2.19
LIME1-206ENST00000487026 GRIN2DO15399 1336 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 NT5C2P49902 561 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 PSMC6P62333 389 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 ITGA7Q13683 1181 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 DUSP28Q4G0W2 176 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 MFSD5Q6N075 450 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 ADGRF4Q8IZF3 695 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 SLC43A3Q8NBI5 491 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 VAT1LQ9HCJ6 419 aa28.73■■■□□ 2.19
LIME1-206ENST00000487026 TLR3O15455 904 aaKnown RBP28.72■■■□□ 2.19
LIME1-206ENST00000487026 ZEB2O60315 1214 aa28.72■■■□□ 2.19
LIME1-206ENST00000487026 CABYRO75952 493 aa28.72■■■□□ 2.19
LIME1-206ENST00000487026 PDE4DQ08499 809 aa28.72■■■□□ 2.19
LIME1-206ENST00000487026 CDC37Q16543 378 aaPredicted RBP28.72■■■□□ 2.19
LIME1-206ENST00000487026 TBC1D5Q92609 795 aa28.72■■■□□ 2.19
LIME1-206ENST00000487026 CD4P01730 458 aa28.71■■■□□ 2.19
LIME1-206ENST00000487026 SMAD3P84022 425 aaKnown RBP28.71■■■□□ 2.19
LIME1-206ENST00000487026 C16orf59Q7L2K0 433 aa28.71■■■□□ 2.19
LIME1-206ENST00000487026 UBAC1Q9BSL1 405 aa28.71■■■□□ 2.19
LIME1-206ENST00000487026 SEMA6BQ9H3T3 888 aa28.71■■■□□ 2.19
LIME1-206ENST00000487026 CNNM2Q9H8M5 875 aa28.71■■■□□ 2.19
LIME1-206ENST00000487026 LOC102724159A0A0B4J2E5 919 aa28.7■■■□□ 2.18
LIME1-206ENST00000487026 RBM47A0AV96 593 aaKnown RBP28.7■■■□□ 2.18
LIME1-206ENST00000487026 PARP1P09874 1014 aaKnown RBP28.7■■■□□ 2.18
LIME1-206ENST00000487026 CSF2RAP15509 400 aa28.7■■■□□ 2.18
LIME1-206ENST00000487026 PWP2Q15269 919 aaKnown RBP28.7■■■□□ 2.18
LIME1-206ENST00000487026 ASPRV1Q53RT3 343 aa28.7■■■□□ 2.18
LIME1-206ENST00000487026 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.7■■■□□ 2.188e-8■■■□□ 15.1
LIME1-206ENST00000487026 DHX16O60231 1041 aaKnown RBP28.69■■■□□ 2.18
LIME1-206ENST00000487026 CYP2C18P33260 490 aa28.69■■■□□ 2.18
LIME1-206ENST00000487026 PTH1RQ03431 593 aa28.69■■■□□ 2.18
LIME1-206ENST00000487026 CYB5R4Q7L1T6 521 aa28.69■■■□□ 2.18
LIME1-206ENST00000487026 TRPV6Q9H1D0 765 aa28.69■■■□□ 2.18
LIME1-206ENST00000487026 JMJD4Q9H9V9 463 aa28.69■■■□□ 2.18
LIME1-206ENST00000487026 ACRP10323 421 aa28.68■■■□□ 2.18
LIME1-206ENST00000487026 EDNRBP24530 442 aa28.68■■■□□ 2.18
LIME1-206ENST00000487026 CHMLP26374 656 aa28.68■■■□□ 2.18
LIME1-206ENST00000487026 QRICH1Q2TAL8 776 aa28.68■■■□□ 2.18
LIME1-206ENST00000487026 IFIT1BQ5T764 474 aaKnown RBP28.68■■■□□ 2.18
LIME1-206ENST00000487026 RGS22Q8NE09 1264 aa28.68■■■□□ 2.18
LIME1-206ENST00000487026 DNERQ8NFT8 737 aa28.68■■■□□ 2.18
LIME1-206ENST00000487026 OR6J1Q8NGC5 347 aa28.68■■■□□ 2.18
LIME1-206ENST00000487026 TTYH1Q9H313 450 aaPredicted RBP28.68■■■□□ 2.18
LIME1-206ENST00000487026 PPIGQ13427 754 aaKnown RBP eCLIP28.67■■■□□ 2.186e-9■■■■□ 19.6
LIME1-206ENST00000487026 STAG2Q8N3U4 1231 aa28.67■■■□□ 2.18
LIME1-206ENST00000487026 TMEM199Q8N511 208 aa28.67■■■□□ 2.18
LIME1-206ENST00000487026 COPS5Q92905 334 aa28.67■■■□□ 2.18
LIME1-206ENST00000487026 MPHOSPH6Q99547 160 aaKnown RBP28.67■■■□□ 2.18
LIME1-206ENST00000487026 MYL3P08590 195 aa28.66■■■□□ 2.18
LIME1-206ENST00000487026 SEC23AQ15436 765 aa28.66■■■□□ 2.18
LIME1-206ENST00000487026 TMEM240Q5SV17 173 aa28.66■■■□□ 2.18
LIME1-206ENST00000487026 TAAR1Q96RJ0 339 aa28.66■■■□□ 2.18
LIME1-206ENST00000487026 CDX2Q99626 313 aaPredicted RBP28.66■■■□□ 2.18
LIME1-206ENST00000487026 ABCB11O95342 1321 aa28.66■■■□□ 2.18
LIME1-206ENST00000487026 UMODL1Q5DID0 1318 aa28.66■■■□□ 2.18
LIME1-206ENST00000487026 B4GALT4O60513 344 aa28.65■■■□□ 2.18
LIME1-206ENST00000487026 FBXO11Q86XK2 927 aa28.65■■■□□ 2.18
LIME1-206ENST00000487026 SYTL5Q8TDW5 730 aaPredicted RBP28.65■■■□□ 2.18
LIME1-206ENST00000487026 RUFY2Q8WXA3 655 aa28.65■■■□□ 2.18
LIME1-206ENST00000487026 COL20A1Q9P218 1284 aa28.65■■■□□ 2.18
LIME1-206ENST00000487026 RAD50Q92878 1312 aa28.65■■■□□ 2.18
LIME1-206ENST00000487026 A0A0C4DFX4 3053 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 CYP21A2P08686 494 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 CPT1AP50416 773 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 PPP2R5BQ15173 497 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 ZNF365Q70YC5 407 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 SCFD2Q8WU76 684 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 PPP1R13LQ8WUF5 828 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 HIPK3Q9H422 1215 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 POLR3EQ9NVU0 708 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 TAF6LQ9Y6J9 622 aa28.64■■■□□ 2.18
LIME1-206ENST00000487026 HSFX4A0A1B0GTS1 333 aaPredicted RBP28.63■■■□□ 2.17
LIME1-206ENST00000487026 HSFX3A0A1B0GWH4 333 aaPredicted RBP28.63■■■□□ 2.17
LIME1-206ENST00000487026 B4DLN1 442 aa28.63■■■□□ 2.17
LIME1-206ENST00000487026 TXNP10599 105 aaKnown RBP28.63■■■□□ 2.17
LIME1-206ENST00000487026 MRPL12P52815 198 aaKnown RBP28.63■■■□□ 2.17
LIME1-206ENST00000487026 PURAQ00577 322 aaKnown RBP28.63■■■□□ 2.17
LIME1-206ENST00000487026 KLRF2D3W0D1 207 aa28.62■■■□□ 2.17
LIME1-206ENST00000487026 ARIH2O95376 493 aa28.62■■■□□ 2.17
LIME1-206ENST00000487026 CCL23P55773 120 aa28.62■■■□□ 2.17
LIME1-206ENST00000487026 TRDNQ13061 729 aa28.62■■■□□ 2.17
LIME1-206ENST00000487026 SEZ6LQ9BYH1 1024 aa28.62■■■□□ 2.17
LIME1-206ENST00000487026 ALDH8A1Q9H2A2 487 aaPredicted RBP28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms