RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 CCDC178Q5BJE1 867 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 SND1Q7KZF4 910 aaKnown RBP eCLIP13.59□□□□□ -0.23
COL3A1-206ENST00000487010 FBXO33Q7Z6M2 555 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 DGKHQ86XP1 1220 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 EFCAB13Q8IY85 973 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 HDAC7Q8WUI4 952 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 AK8Q96MA6 479 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 LRRC1Q9BTT6 524 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 BSDC1Q9NW68 430 aaPredicted RBP13.59□□□□□ -0.23
COL3A1-206ENST00000487010 PLAGL2Q9UPG8 496 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 CAPN6Q9Y6Q1 641 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 GNAQP50148 359 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 ASIC1P78348 528 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 GRM4Q14833 912 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 PNMA1Q8ND90 353 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 SPATA4Q8NEY3 305 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 ANKS1AQ92625 1134 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 HINFPQ9BQA5 517 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 IFIH1Q9BYX4 1025 aaKnown RBP13.59□□□□□ -0.23
COL3A1-206ENST00000487010 MLXIPQ9HAP2 919 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 IL17RBQ9NRM6 502 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 TCP11L1Q9NUJ3 509 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 ARHGAP20Q9P2F6 1191 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 DMGDHQ9UI17 866 aaKnown RBP13.59□□□□□ -0.23
COL3A1-206ENST00000487010 MAD2L2Q9UI95 211 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 MINPP1Q9UNW1 487 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 TAF1P21675 1872 aa13.58□□□□□ -0.23
COL3A1-206ENST00000487010 CASZ1Q86V15 1759 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 GOLGA8KD6RF30 607 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 STXBP3O00186 592 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 NKRFO15226 690 aaKnown RBP eCLIP13.58□□□□□ -0.24
COL3A1-206ENST00000487010 MOCS3O95396 460 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 LCA5LO95447 670 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 CPP00450 1065 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 FCER1AP12319 257 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 TFAP4Q01664 338 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 TXNRD1Q16881 649 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 COBLL1Q53SF7 1204 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 RRP36Q96EU6 259 aaKnown RBP13.58□□□□□ -0.24
COL3A1-206ENST00000487010 SH3GL2Q99962 352 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 FAM107BQ9H098 131 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 DOT1LQ8TEK3 1739 aa13.58□□□□□ -0.24
COL3A1-206ENST00000487010 A0A087WUV0 522 aaPredicted RBP13.57□□□□□ -0.24
COL3A1-206ENST00000487010 TCP1P17987 556 aaKnown RBP13.57□□□□□ -0.24
COL3A1-206ENST00000487010 ATP6V1AP38606 617 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 KIF11P52732 1056 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 SLC35G1Q2M3R5 365 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 GBP6Q6ZN66 633 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 C3orf67Q6ZVT6 689 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 HEATR3Q7Z4Q2 680 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 C2CD5Q86YS7 1000 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 OSBPL9Q96SU4 736 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 CAPS2Q9BXY5 557 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 SEMA6BQ9H3T3 888 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 BARHL2Q9NY43 387 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 SIK3Q9Y2K2 1263 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 MYH10P35580 1976 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 OPA1O60313 960 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 OR52Z1P0C646 297 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 EIF4A3P38919 411 aaKnown RBP13.57□□□□□ -0.24
COL3A1-206ENST00000487010 AMPD3Q01432 767 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 SF3B3Q15393 1217 aaKnown RBP13.57□□□□□ -0.24
COL3A1-206ENST00000487010 SKIDA1Q1XH10 827 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 VWA3BQ502W6 1294 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 CNNM4Q6P4Q7 775 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 DRC1Q96MC2 740 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 HYOU1Q9Y4L1 999 aa13.57□□□□□ -0.24
COL3A1-206ENST00000487010 EPHB6O15197 1021 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 CYTH3O43739 400 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 USP17L8P0C7I0 530 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 CCT5P48643 541 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 EPHB4P54760 987 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 SLC7A5Q01650 507 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 ALS2CLQ60I27 953 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 CENPPQ6IPU0 288 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 NFRKBQ6P4R8 1299 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 TADA2BQ86TJ2 420 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 KIAA0895Q8NCT3 520 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 ALS2CR12Q96Q35 445 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 MCM9Q9NXL9 1143 aa13.56□□□□□ -0.24
COL3A1-206ENST00000487010 A0A0G2JS52 829 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 EPB41P11171 864 aaKnown RBP13.55□□□□□ -0.24
COL3A1-206ENST00000487010 KLRK1P26718 216 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 TNFRSF8P28908 595 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 ERFEQ4G0M1 354 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 ICE2Q659A1 982 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 HAUS3Q68CZ6 603 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 EMBQ6PCB8 327 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 NDST4Q9H3R1 872 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 DEF6Q9H4E7 631 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 GRIN2DO15399 1336 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 MYH14Q7Z406 1995 aaKnown RBP13.55□□□□□ -0.24
COL3A1-206ENST00000487010 EBAG9O00559 213 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 EIF3HO15372 352 aaKnown RBP eCLIP13.55□□□□□ -0.24
COL3A1-206ENST00000487010 PJA2O43164 708 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 AKR1B10O60218 316 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 PRDX5P30044 214 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 MATR3P43243 847 aaKnown RBP eCLIP13.55□□□□□ -0.24
COL3A1-206ENST00000487010 NT5C2P49902 561 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 SLC4A8Q2Y0W8 1093 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms