RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 Q9Y3F1 56 aa21.47■■□□□ 1.03
PRPF40A-209ENST00000486100 ELP1O95163 1332 aa21.47■■□□□ 1.03
PRPF40A-209ENST00000486100 ABCB11O95342 1321 aa21.47■■□□□ 1.03
PRPF40A-209ENST00000486100 PALM3A6NDB9 673 aaPredicted RBP21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 KLRF2D3W0D1 207 aa21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 DYNC1LI2O43237 492 aaPredicted RBP21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 WTAPQ15007 396 aa21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 ANKRD33Q7Z3H0 272 aa21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 SH3RF1Q7Z6J0 888 aa21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 FBXO11Q86XK2 927 aa21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 TOX2Q96NM4 488 aa21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 MPHOSPH6Q99547 160 aaKnown RBP21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 AP5M1Q9H0R1 490 aa21.46■■□□□ 1.03
PRPF40A-209ENST00000486100 TRIM43BA6NCK2 446 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 LRIT3Q3SXY7 679 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 CHST3Q7LGC8 479 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 TLK2Q86UE8 772 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 SKAP1Q86WV1 359 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 MCF2L2Q86YR7 1114 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 MB21D2Q8IYB1 491 aaPredicted RBP21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 IGDCC4Q8TDY8 1250 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 TBC1D5Q92609 795 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 VTI1AQ96AJ9 217 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 TRIM43Q96BQ3 446 aaPredicted RBP21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 SENP2Q9HC62 589 aa21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 MRPL11Q9Y3B7 192 aaKnown RBP21.45■■□□□ 1.02
PRPF40A-209ENST00000486100 RBM47A0AV96 593 aaKnown RBP21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 B4DLN1 442 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 SOX1O00570 391 aaPredicted RBP21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 PQBP1O60828 265 aaKnown RBP21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 CLTBP09497 229 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 EDNRBP24530 442 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 MRPL12P52815 198 aaKnown RBP21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 ANTXR2P58335 489 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 BEX3Q00994 111 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 PDE4DQ08499 809 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 GRM4Q14833 912 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 DUSP28Q4G0W2 176 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 TMEM67Q5HYA8 995 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 MTMR8Q96EF0 704 aa21.44■■□□□ 1.02
PRPF40A-209ENST00000486100 DCDC2CA8MYV0 355 aa21.43■■□□□ 1.02
PRPF40A-209ENST00000486100 CDK7P50613 346 aa21.43■■□□□ 1.02
PRPF40A-209ENST00000486100 TROAPQ12815 778 aa21.43■■□□□ 1.02
PRPF40A-209ENST00000486100 FSCN1Q16658 493 aaKnown RBP21.43■■□□□ 1.02
PRPF40A-209ENST00000486100 TMEM63BQ5T3F8 832 aa21.43■■□□□ 1.02
PRPF40A-209ENST00000486100 MTA3Q9BTC8 594 aa21.43■■□□□ 1.02
PRPF40A-209ENST00000486100 AMNQ9BXJ7 453 aa21.43■■□□□ 1.02
PRPF40A-209ENST00000486100 WDR11Q9BZH6 1224 aa21.43■■□□□ 1.02
PRPF40A-209ENST00000486100 A0A0U1RQG5 324 aaPredicted RBP21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 ARVCFO00192 962 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 ZBTB5O15062 677 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 KIAA0355O15063 1070 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 ZEB2O60315 1214 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 CABYRO75952 493 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 PTGS1P23219 599 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 FAAP100Q0VG06 881 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 NECTIN1Q15223 517 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 CATIPQ7Z7H3 387 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 SYTL5Q8TDW5 730 aaPredicted RBP21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 BADQ92934 168 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 ANO2Q9NQ90 1003 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 TMEM39AQ9NV64 488 aa21.42■■□□□ 1.02
PRPF40A-209ENST00000486100 MROH7Q68CQ1 1323 aa21.41■■□□□ 1.02
PRPF40A-209ENST00000486100 SLC27A2O14975 620 aa21.41■■□□□ 1.02
PRPF40A-209ENST00000486100 LRCH3Q96II8 777 aa21.41■■□□□ 1.02
PRPF40A-209ENST00000486100 TAAR1Q96RJ0 339 aa21.41■■□□□ 1.02
PRPF40A-209ENST00000486100 RIOX1Q9H6W3 641 aa21.41■■□□□ 1.02
PRPF40A-209ENST00000486100 MCM3APO60318 1980 aa21.41■■□□□ 1.02
PRPF40A-209ENST00000486100 ITGB8P26012 769 aa21.4■■□□□ 1.02
PRPF40A-209ENST00000486100 SLC35G1Q2M3R5 365 aa21.4■■□□□ 1.02
PRPF40A-209ENST00000486100 CREB3L3Q68CJ9 461 aa21.4■■□□□ 1.02
PRPF40A-209ENST00000486100 CASC1Q6TDU7 716 aa21.4■■□□□ 1.02
PRPF40A-209ENST00000486100 CXCL17Q6UXB2 119 aa21.4■■□□□ 1.02
PRPF40A-209ENST00000486100 NSUN6Q8TEA1 469 aaKnown RBP21.4■■□□□ 1.02
PRPF40A-209ENST00000486100 PCDHA1Q9Y5I3 950 aa21.4■■□□□ 1.02
PRPF40A-209ENST00000486100 NKRFO15226 690 aaKnown RBP eCLIP21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 PRC1O43663 620 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 PPP1R11O60927 126 aaPredicted RBP21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 RAG1P15918 1043 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 MCM5P33992 734 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 TRAF1Q13077 416 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 TMTC2Q8N394 836 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 SCFD2Q8WU76 684 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 CCDC136Q96JN2 1154 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 IWS1Q96ST2 819 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 MAP3K14Q99558 947 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 LY9Q9HBG7 655 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 MAP3K20Q9NYL2 800 aaKnown RBP21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 COL20A1Q9P218 1284 aa21.39■■□□□ 1.01
PRPF40A-209ENST00000486100 CYTH3O43739 400 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 CFBP00751 764 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 GHRHRQ02643 423 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 GPR153Q6NV75 609 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 HOMER1Q86YM7 354 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 SAMD3Q8N6K7 520 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 SLC43A3Q8NBI5 491 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 TMEM87BQ96K49 555 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 PIGSQ96S52 555 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 RMDN3Q96TC7 470 aa21.38■■□□□ 1.01
PRPF40A-209ENST00000486100 SEZ6LQ9BYH1 1024 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms