RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 NCKAP1LP55160 1127 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 SF1Q15637 639 aaKnown RBP6.37□□□□□ -1.39
VPS41-213ENST00000485955 FXNQ16595 210 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 SV2CQ496J9 727 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 MBLAC2Q68D91 279 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 BICRALQ6AI39 1079 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 POMZP3Q6PJE2 187 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 CELF2-AS1Q8N7Q2 184 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 IRF2BPLQ9H1B7 796 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 CYP26B1Q9NR63 512 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 ST7Q9NRC1 585 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 CLEC1BQ9P126 229 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 PLA2G2DQ9UNK4 145 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 RWDD3Q9Y3V2 267 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 A0A1W2PQJ5 194 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 C7orf72A4D263 438 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 N4BP3O15049 544 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 THBDP07204 575 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 NAT2P11245 290 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 PAMP19021 973 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 CORO7P57737 925 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 PLEKHN1Q494U1 663 aaPredicted RBP6.36□□□□□ -1.39
VPS41-213ENST00000485955 ANKS3Q6ZW76 656 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 LDHDQ86WU2 507 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 IGDCC3Q8IVU1 814 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 BTN2A2Q8WVV5 523 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 MTA3Q9BTC8 594 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 NKX2-4Q9H2Z4 354 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 RXFP1Q9HBX9 757 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 EPB41L4AQ9HCS5 686 aaPredicted RBP6.36□□□□□ -1.39
VPS41-213ENST00000485955 GULP1Q9UBP9 304 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 CNOT6Q9ULM6 557 aaKnown RBP6.36□□□□□ -1.39
VPS41-213ENST00000485955 KCTD3Q9Y597 815 aa6.36□□□□□ -1.39
VPS41-213ENST00000485955 ZC3H12DA2A288 527 aaKnown RBP6.35□□□□□ -1.39
VPS41-213ENST00000485955 SRGAP3O43295 1099 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 KLF4O43474 513 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 NUAK1O60285 661 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 CYBBP04839 570 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 ZSCAN22P10073 491 aaPredicted RBP6.35□□□□□ -1.39
VPS41-213ENST00000485955 GLI4P10075 376 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 MAPKAPK2P49137 400 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 NR1I3Q14994 352 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 INF2Q27J81 1249 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 CIAPIN1Q6FI81 312 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 PAQR3Q6TCH7 311 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 AMIGO3Q86WK7 504 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 ZNF227Q86WZ6 799 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 CRACR2BQ8N4Y2 399 aaPredicted RBP6.35□□□□□ -1.39
VPS41-213ENST00000485955 ZSCAN18Q8TBC5 510 aaPredicted RBP6.35□□□□□ -1.39
VPS41-213ENST00000485955 FRS2Q8WU20 508 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 MZB1Q8WU39 189 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 DPF3Q92784 378 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 PCDHA5Q9Y5H7 936 aa6.35□□□□□ -1.39
VPS41-213ENST00000485955 F8W031 263 aaPredicted RBP6.34□□□□□ -1.39
VPS41-213ENST00000485955 CAPNS1P04632 268 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 PRR5P85299 388 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 ZNF200P98182 395 aaPredicted RBP6.34□□□□□ -1.39
VPS41-213ENST00000485955 TMEM62Q0P6H9 643 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 KRTAP19-4Q3LI73 84 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 LCE1DQ5T752 114 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 OLFML2BQ68BL8 750 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 ZC3H14Q6PJT7 736 aaKnown RBP6.34□□□□□ -1.39
VPS41-213ENST00000485955 TMEFF1Q8IYR6 380 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 LZTR1Q8N653 840 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 NPLOC4Q8TAT6 608 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 SIGLEC10Q96LC7 697 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 LRP2BPQ9P2M1 347 aa6.34□□□□□ -1.39
VPS41-213ENST00000485955 TMEFF2Q9UIK5 374 aaPredicted RBP6.34□□□□□ -1.39
VPS41-213ENST00000485955 IRS2Q9Y4H2 1338 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 IRS4O14654 1257 aaPredicted RBP6.33□□□□□ -1.4
VPS41-213ENST00000485955 PI3P19957 117 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 GRIA2P42262 883 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 PRSS53Q2L4Q9 553 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 FBLN7Q53RD9 439 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 NAALADL2Q58DX5 795 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 SIAH1Q8IUQ4 282 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 CCDC103Q8IW40 242 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 KREMEN2Q8NCW0 462 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 MMP19Q99542 508 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 IRAK3Q9Y616 596 aa6.33□□□□□ -1.4
VPS41-213ENST00000485955 TRBV23OR9-2A0A075B6M9 112 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 FUCA1P04066 466 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 FBLN1P23142 703 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 HOXC12P31275 282 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 ZC3H6P61129 1189 aaKnown RBP6.32□□□□□ -1.4
VPS41-213ENST00000485955 DDR2Q16832 855 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 SLC10A6Q3KNW5 377 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 DENND5AQ6IQ26 1287 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 EEPD1Q7L9B9 569 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 PLEKHO2Q8TD55 490 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 BCAS3Q9H6U6 928 aa6.32□□□□□ -1.4
VPS41-213ENST00000485955 R3HCC1Q9Y3T6 440 aaKnown RBP6.32□□□□□ -1.4
VPS41-213ENST00000485955 NPHS1O60500 1241 aa6.31□□□□□ -1.4
VPS41-213ENST00000485955 BUB1BO60566 1050 aaPredicted RBP6.31□□□□□ -1.4
VPS41-213ENST00000485955 IGFBP6P24592 240 aaPredicted RBP6.31□□□□□ -1.4
VPS41-213ENST00000485955 ECI1P42126 302 aa6.31□□□□□ -1.4
VPS41-213ENST00000485955 ZNF385BQ569K4 471 aa6.31□□□□□ -1.4
VPS41-213ENST00000485955 USP33Q8TEY7 942 aa6.31□□□□□ -1.4
VPS41-213ENST00000485955 DACT3Q96B18 629 aaPredicted RBP6.31□□□□□ -1.4
VPS41-213ENST00000485955 KRTAP4-7Q9BYR0 210 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms