RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 MCTP2Q6DN12 878 aa20.3■□□□□ 0.84
SMARCD3-212ENST00000485610 KRT25Q7Z3Z0 450 aa20.3■□□□□ 0.84
SMARCD3-212ENST00000485610 ANKRD13CQ8N6S4 541 aa20.3■□□□□ 0.84
SMARCD3-212ENST00000485610 SHCBP1Q8NEM2 672 aa20.3■□□□□ 0.84
SMARCD3-212ENST00000485610 GPRC5AQ8NFJ5 357 aa20.3■□□□□ 0.84
SMARCD3-212ENST00000485610 RASGRP4Q8TDF6 673 aa20.3■□□□□ 0.84
SMARCD3-212ENST00000485610 MAF1Q9H063 256 aa20.3■□□□□ 0.84
SMARCD3-212ENST00000485610 ZFYVE28Q9HCC9 887 aa20.3■□□□□ 0.84
SMARCD3-212ENST00000485610 CCDC194A0A1B0GVG4 234 aa20.29■□□□□ 0.84
SMARCD3-212ENST00000485610 MEIS2O14770 477 aa20.29■□□□□ 0.84
SMARCD3-212ENST00000485610 CFBP00751 764 aa20.29■□□□□ 0.84
SMARCD3-212ENST00000485610 HSPA6P17066 643 aa20.29■□□□□ 0.84
SMARCD3-212ENST00000485610 AP3B2Q13367 1082 aa20.29■□□□□ 0.84
SMARCD3-212ENST00000485610 USP17L6PQ6QN14 398 aa20.29■□□□□ 0.84
SMARCD3-212ENST00000485610 MAP3K20Q9NYL2 800 aaKnown RBP20.29■□□□□ 0.84
SMARCD3-212ENST00000485610 BIN2Q9UBW5 565 aaPredicted RBP20.29■□□□□ 0.84
SMARCD3-212ENST00000485610 HSD17B4P51659 736 aa20.28■□□□□ 0.84
SMARCD3-212ENST00000485610 C1QTNF8P60827 252 aa20.28■□□□□ 0.84
SMARCD3-212ENST00000485610 JAKMIP3Q5VZ66 844 aa20.28■□□□□ 0.84
SMARCD3-212ENST00000485610 NCAPG2Q86XI2 1143 aa20.28■□□□□ 0.84
SMARCD3-212ENST00000485610 TNPO1Q92973 898 aaKnown RBP20.28■□□□□ 0.84
SMARCD3-212ENST00000485610 ZNF236Q9UL36 1845 aa20.28■□□□□ 0.84
SMARCD3-212ENST00000485610 DOCK3Q8IZD9 2030 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 CA12O43570 354 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 TLR2O60603 784 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 FOSP01100 380 aaPredicted RBP20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 ERCC3P19447 782 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 HOXA13P31271 388 aaPredicted RBP20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 NONOQ15233 471 aaKnown RBP eCLIP20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 Q3C1V9 767 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 MYSM1Q5VVJ2 828 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 NSMFQ6X4W1 530 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 PIK3AP1Q6ZUJ8 805 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 MROH8Q9H579 483 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 TMEM260Q9NX78 707 aa20.27■□□□□ 0.84
SMARCD3-212ENST00000485610 PFASO15067 1338 aa20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 FAM205CA6NFA0 338 aa20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 SPDYE3A6NKU9 549 aa20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 BCRP11274 1271 aa20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 CRHR2Q13324 411 aa20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 NOM1Q5C9Z4 860 aaKnown RBP20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 EARS2Q5JPH6 523 aaKnown RBP20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 RNF207Q6ZRF8 634 aa20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 TBC1D5Q92609 795 aa20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 CPA4Q9UI42 421 aa20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 NOL7Q9UMY1 257 aaKnown RBP20.26■□□□□ 0.83
SMARCD3-212ENST00000485610 FAM173BQ6P4H8 233 aa20.25■□□□□ 0.83
SMARCD3-212ENST00000485610 SLC30A10Q6XR72 485 aa20.25■□□□□ 0.83
SMARCD3-212ENST00000485610 ANO3Q9BYT9 981 aa20.25■□□□□ 0.83
SMARCD3-212ENST00000485610 A1CFQ9NQ94 594 aaKnown RBP20.25■□□□□ 0.83
SMARCD3-212ENST00000485610 RPS6P62753 249 aaKnown RBP20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 RILPL1Q5EBL4 403 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 C17orf99Q6UX52 265 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 FCHSD1Q86WN1 690 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 PORCNQ9H237 461 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 EHMT1Q9H9B1 1298 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 CYP39A1Q9NYL5 469 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 TRAPPC10P48553 1259 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 FOXD4L6Q3SYB3 417 aaPredicted RBP20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 WDR78Q5VTH9 848 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 FOXD4L3Q6VB84 417 aaPredicted RBP20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 SYTL5Q8TDW5 730 aaPredicted RBP20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 PGBD1Q96JS3 809 aa20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 ZNF396Q96N95 335 aaPredicted RBP20.24■□□□□ 0.83
SMARCD3-212ENST00000485610 LRRC37A2A6NM11 1700 aa20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 MCM3APO60318 1980 aa20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 MAPK4P31152 587 aa20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 BAATQ14032 418 aaPredicted RBP20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 INF2Q27J81 1249 aa20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 ATL3Q6DD88 541 aa20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 CCAR1Q8IX12 1150 aaKnown RBP20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 ANKRD35Q8N283 1001 aa20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 EFCC1Q9HA90 598 aa20.23■□□□□ 0.83
SMARCD3-212ENST00000485610 SREBF1P36956 1147 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 KRT85P78386 507 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 DNM1Q05193 864 aaKnown RBP20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 KCTD2Q14681 263 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 NEK8Q86SG6 692 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 TBCKQ8TEA7 893 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 MMP19Q99542 508 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 CFHR5Q9BXR6 569 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 COL20A1Q9P218 1284 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 KIAA1217Q5T5P2 1943 aa20.22■□□□□ 0.83
SMARCD3-212ENST00000485610 ZSWIM8A7E2V4 1837 aa20.21■□□□□ 0.83
SMARCD3-212ENST00000485610 FRMPD4Q14CM0 1322 aa20.21■□□□□ 0.83
SMARCD3-212ENST00000485610 FCER1AP12319 257 aa20.21■□□□□ 0.83
SMARCD3-212ENST00000485610 TOB1P50616 345 aaPredicted RBP20.21■□□□□ 0.83
SMARCD3-212ENST00000485610 CLEC17AQ6ZS10 378 aa20.21■□□□□ 0.83
SMARCD3-212ENST00000485610 GBP4Q96PP9 640 aa20.21■□□□□ 0.83
SMARCD3-212ENST00000485610 RPTORQ8N122 1335 aa20.2■□□□□ 0.82
SMARCD3-212ENST00000485610 BAG4O95429 457 aaKnown RBP20.2■□□□□ 0.82
SMARCD3-212ENST00000485610 NCLP19338 710 aaKnown RBP20.2■□□□□ 0.82
SMARCD3-212ENST00000485610 TTC38Q5R3I4 469 aa20.2■□□□□ 0.82
SMARCD3-212ENST00000485610 USP28Q96RU2 1077 aa20.2■□□□□ 0.82
SMARCD3-212ENST00000485610 R3HDMLQ9H3Y0 253 aa20.2■□□□□ 0.82
SMARCD3-212ENST00000485610 CFAP45Q9UL16 551 aa20.2■□□□□ 0.82
SMARCD3-212ENST00000485610 IVNS1ABPQ9Y6Y0 642 aa20.2■□□□□ 0.82
SMARCD3-212ENST00000485610 ATP2B1P20020 1258 aa20.19■□□□□ 0.82
SMARCD3-212ENST00000485610 ARHGAP4P98171 946 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms