RNA–Protein interactions for RNA: ENST00000480923.5

VPS36-204, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 3

Gene VPS36, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-204ENST00000480923 VTA1Q9NP79 307 aa23.39■■□□□ 1.33
VPS36-204ENST00000480923 ZMYND8Q9ULU4 1186 aaPredicted RBP23.39■■□□□ 1.33
VPS36-204ENST00000480923 PCDHA1Q9Y5I3 950 aa23.39■■□□□ 1.33
VPS36-204ENST00000480923 SLC12A7Q9Y666 1083 aa23.39■■□□□ 1.33
VPS36-204ENST00000480923 SMCHD1A6NHR9 2005 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.38■■□□□ 1.33
VPS36-204ENST00000480923 CYTH3O43739 400 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 PPP1R11O60927 126 aaPredicted RBP23.38■■□□□ 1.33
VPS36-204ENST00000480923 C6orf222P0C671 652 aaPredicted RBP23.38■■□□□ 1.33
VPS36-204ENST00000480923 CALM1P0DP23 149 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 CALM2P0DP24 149 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 CALM3P0DP25 149 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 PDE4DQ08499 809 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 PIBF1Q8WXW3 757 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 MAF1Q9H063 256 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 PDGFCQ9NRA1 345 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 PHF24Q9UPV7 400 aa23.38■■□□□ 1.33
VPS36-204ENST00000480923 B4DLN1 442 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 CFBP00751 764 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 RXRAP19793 462 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 MRPL12P52815 198 aaKnown RBP23.37■■□□□ 1.33
VPS36-204ENST00000480923 TRAF1Q13077 416 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 TAPT1Q6NXT6 567 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 CHRDL2Q6WN34 429 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 SLC39A5Q6ZMH5 540 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 DHX32Q7L7V1 743 aaKnown RBP23.37■■□□□ 1.33
VPS36-204ENST00000480923 RAB11FIP4Q86YS3 637 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 SYTL5Q8TDW5 730 aaPredicted RBP23.37■■□□□ 1.33
VPS36-204ENST00000480923 TCEANC2Q96MN5 208 aa23.37■■□□□ 1.33
VPS36-204ENST00000480923 PNMA6FA0A0J9YX94 578 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 MYADML2A6NDP7 307 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 SYN1P17600 705 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 HSPA4P34932 840 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 GNAQP50148 359 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 RTP1P59025 263 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 EXOSC10Q01780 885 aaKnown RBP23.36■■□□□ 1.33
VPS36-204ENST00000480923 IQSEC1Q6DN90 963 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 SYNE3Q6ZMZ3 975 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 KLHDC9Q8NEP7 349 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 LZTS2Q9BRK4 669 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 TSEN34Q9BSV6 310 aaKnown RBP23.36■■□□□ 1.33
VPS36-204ENST00000480923 UPF3AQ9H1J1 476 aaKnown RBP23.36■■□□□ 1.33
VPS36-204ENST00000480923 COLQQ9Y215 455 aaPredicted RBP23.36■■□□□ 1.33
VPS36-204ENST00000480923 ATP11BQ9Y2G3 1177 aa23.36■■□□□ 1.33
VPS36-204ENST00000480923 HMGB1P09429 215 aaKnown RBP23.35■■□□□ 1.33
VPS36-204ENST00000480923 SMPD1P17405 629 aa23.35■■□□□ 1.33
VPS36-204ENST00000480923 GJA9P57773 515 aa23.35■■□□□ 1.33
VPS36-204ENST00000480923 IRX5P78411 483 aaPredicted RBP23.35■■□□□ 1.33
VPS36-204ENST00000480923 KCNA10Q16322 511 aa23.35■■□□□ 1.33
VPS36-204ENST00000480923 TAAR1Q96RJ0 339 aa23.35■■□□□ 1.33
VPS36-204ENST00000480923 SPZ1Q9BXG8 430 aa23.35■■□□□ 1.33
VPS36-204ENST00000480923 COL20A1Q9P218 1284 aa23.35■■□□□ 1.33
VPS36-204ENST00000480923 LCTP09848 1927 aa23.35■■□□□ 1.33
VPS36-204ENST00000480923 ALPK3Q96L96 1907 aa23.35■■□□□ 1.33
VPS36-204ENST00000480923 MCM3APO60318 1980 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 A0A1W2PQ45 241 aaPredicted RBP23.34■■□□□ 1.33
VPS36-204ENST00000480923 A0A1W2PQY0 241 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 MOXD2PA6NHM9 499 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 PLEKHA8P1O95397 391 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 EDNRBP24530 442 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 ACLYP53396 1101 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 GNASQ5JWF2 1037 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 TLK2Q86UE8 772 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 SGMS1Q86VZ5 419 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 MICU3Q86XE3 530 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 PCSK9Q8NBP7 692 aaKnown RBP23.34■■□□□ 1.33
VPS36-204ENST00000480923 NSUN6Q8TEA1 469 aaKnown RBP23.34■■□□□ 1.33
VPS36-204ENST00000480923 KCNB2Q92953 911 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 RRP36Q96EU6 259 aaKnown RBP23.34■■□□□ 1.33
VPS36-204ENST00000480923 JAKMIP1Q96N16 626 aaKnown RBP23.34■■□□□ 1.33
VPS36-204ENST00000480923 AP5M1Q9H0R1 490 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 GNEQ9Y223 722 aaKnown RBP23.34■■□□□ 1.33
VPS36-204ENST00000480923 SNX14Q9Y5W7 946 aa23.34■■□□□ 1.33
VPS36-204ENST00000480923 OPLAHO14841 1288 aa23.33■■□□□ 1.33
VPS36-204ENST00000480923 DYNC1LI2O43237 492 aaPredicted RBP23.33■■□□□ 1.33
VPS36-204ENST00000480923 CST5P28325 142 aaPredicted RBP23.33■■□□□ 1.33
VPS36-204ENST00000480923 FGD1P98174 961 aa23.33■■□□□ 1.33
VPS36-204ENST00000480923 TRIM60Q495X7 471 aa23.33■■□□□ 1.33
VPS36-204ENST00000480923 CCSAPQ6IQ19 270 aaPredicted RBP23.33■■□□□ 1.33
VPS36-204ENST00000480923 FANCBQ8NB91 859 aa23.33■■□□□ 1.33
VPS36-204ENST00000480923 RMDN3Q96TC7 470 aa23.33■■□□□ 1.33
VPS36-204ENST00000480923 WDR11Q9BZH6 1224 aa23.33■■□□□ 1.33
VPS36-204ENST00000480923 SEC63Q9UGP8 760 aaKnown RBP23.33■■□□□ 1.33
VPS36-204ENST00000480923 PTGS1P23219 599 aa23.32■■□□□ 1.32
VPS36-204ENST00000480923 SMARCA1P28370 1054 aa23.32■■□□□ 1.32
VPS36-204ENST00000480923 HSD17B4P51659 736 aa23.32■■□□□ 1.32
VPS36-204ENST00000480923 BEX3Q00994 111 aa23.32■■□□□ 1.32
VPS36-204ENST00000480923 HABP4Q5JVS0 413 aaKnown RBP23.32■■□□□ 1.32
VPS36-204ENST00000480923 ARHGEF16Q5VV41 709 aa23.32■■□□□ 1.32
VPS36-204ENST00000480923 CMTR1Q8N1G2 835 aaKnown RBP23.32■■□□□ 1.32
VPS36-204ENST00000480923 SRBD1Q8N5C6 995 aaKnown RBP23.32■■□□□ 1.32
VPS36-204ENST00000480923 STARD7Q9NQZ5 370 aa23.32■■□□□ 1.32
VPS36-204ENST00000480923 LRRC37A2A6NM11 1700 aa23.32■■□□□ 1.32
VPS36-204ENST00000480923 ASGR1P07306 291 aa23.31■■□□□ 1.32
VPS36-204ENST00000480923 CPA1P15085 419 aa23.31■■□□□ 1.32
VPS36-204ENST00000480923 EIF2AK2P19525 551 aaKnown RBP23.31■■□□□ 1.32
VPS36-204ENST00000480923 HOXA13P31271 388 aaPredicted RBP23.31■■□□□ 1.32
VPS36-204ENST00000480923 SNX17Q15036 470 aa23.31■■□□□ 1.32
VPS36-204ENST00000480923 DUSP28Q4G0W2 176 aa23.31■■□□□ 1.32
VPS36-204ENST00000480923 TMEM63BQ5T3F8 832 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms