RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ARHGAP44Q17R89 818 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 CCDC63Q8NA47 563 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 RRP36Q96EU6 259 aaKnown RBP14.9□□□□□ -0.02
USP42-206ENST00000479544 CPVLQ9H3G5 476 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 AGPAT5Q9NUQ2 364 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 INTS8Q75QN2 995 aaKnown RBP14.9□□□□□ -0.02
USP42-206ENST00000479544 HPS3Q969F9 1004 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 MS4A14Q96JA4 679 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 CXorf56Q9H5V9 222 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 CTNNA2P26232 953 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 KCNJ6P48051 423 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 NR1I3Q14994 352 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 ZNF658Q5TYW1 1059 aaPredicted RBP14.89□□□□□ -0.03
USP42-206ENST00000479544 CAPN12Q6ZSI9 719 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 PCDHA13Q9Y5I0 950 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 CETN3O15182 167 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 PDE8BO95263 885 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 BAG3O95817 575 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 MAEAQ7L5Y9 396 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 CCDC50Q8IVM0 306 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 THOC1Q96FV9 657 aaKnown RBP14.89□□□□□ -0.03
USP42-206ENST00000479544 GGT7Q9UJ14 662 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 NEXMIFQ5QGS0 1516 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 CCDC160A6NGH7 325 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 C6orf229H3BNL8 230 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 SPOPO43791 374 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 CORO7P57737 925 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 ANTXR2P58335 489 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 ZBED6P86452 979 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 DHX9Q08211 1270 aaKnown RBP14.89□□□□□ -0.03
USP42-206ENST00000479544 GSTA5Q7RTV2 222 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 ALDH8A1Q9H2A2 487 aaPredicted RBP14.89□□□□□ -0.03
USP42-206ENST00000479544 ADD3Q9UEY8 706 aaKnown RBP14.89□□□□□ -0.03
USP42-206ENST00000479544 GUCY2CP25092 1073 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 ATP11AP98196 1134 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 NONOQ15233 471 aaKnown RBP eCLIP14.89□□□□□ -0.03
USP42-206ENST00000479544 RWDD2AQ9UIY3 292 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 ATP6V0A2Q9Y487 856 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 TMEM131LA2VDJ0 1609 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 PTPRUQ92729 1446 aa14.89□□□□□ -0.03
USP42-206ENST00000479544 A0A1B0GTH6 734 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 CCDC105Q8IYK2 499 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 FNBP4Q8N3X1 1017 aaPredicted RBP14.88□□□□□ -0.03
USP42-206ENST00000479544 CPSF2Q9P2I0 782 aaKnown RBP14.88□□□□□ -0.03
USP42-206ENST00000479544 SWAP70Q9UH65 585 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 PLAAQ9Y263 795 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 EEF2P13639 858 aaKnown RBP14.88□□□□□ -0.03
USP42-206ENST00000479544 PLTPP55058 493 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 UBE3CQ15386 1083 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 TMEM132AQ24JP5 1023 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 DENND2CQ68D51 928 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 ANKZF1Q9H8Y5 726 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 MLXIPLQ9NP71 852 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 ASIC3Q9UHC3 531 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 HPCAL4Q9UM19 191 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 USP42Q9H9J4 1324 aaKnown RBP14.88□□□□□ -0.03
USP42-206ENST00000479544 MXRA7P84157 204 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 P2RX5Q93086 422 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 SEC31BQ9NQW1 1179 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 CTTNBP2NLQ9P2B4 639 aa14.88□□□□□ -0.03
USP42-206ENST00000479544 SMCO2A6NFE2 343 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 CHUKO15111 745 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 CETN1Q12798 172 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 SETDB1Q15047 1291 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 KCTD19Q17RG1 926 aaPredicted RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 HOOK3Q86VS8 718 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 FAM133AQ8N9E0 248 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 SPATA4Q8NEY3 305 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 STRBPQ96SI9 672 aaKnown RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 NKIRAS1Q9NYS0 192 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 PDE8AO60658 829 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 HNRNPH1P31943 449 aaKnown RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 APBA1Q02410 837 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 GFPT1Q06210 699 aaPredicted RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 EZH2Q15910 746 aaKnown RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 OR2W6PQ8NHA6 318 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 ARHGEF2Q92974 986 aaKnown RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 LRRC27Q9C0I9 530 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 CD248Q9HCU0 757 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 FBXO2Q9UK22 296 aaPredicted RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 ERBB3P21860 1342 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 EEF1GP26641 437 aaKnown RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 RASGRP2Q7LDG7 609 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 CCDC65Q8IXS2 484 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 PNMA1Q8ND90 353 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 LY9Q9HBG7 655 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 DNAJC17Q9NVM6 304 aaKnown RBP14.87□□□□□ -0.03
USP42-206ENST00000479544 HPS5Q9UPZ3 1129 aa14.87□□□□□ -0.03
USP42-206ENST00000479544 CLGNO14967 610 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 ACTN4O43707 911 aaKnown RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 NMT2O60551 498 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 TNFAIP3P21580 790 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 CALCRLQ16602 461 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 CCDC93Q567U6 631 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 RNF26Q9BY78 433 aaPredicted RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 BTG4Q9NY30 223 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 SPATA31A3Q5VYP0 1347 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 CHMP2AO43633 222 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 ZNF131P52739 623 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 OTUD6AQ7L8S5 288 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms