RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PI4K2BQ8TCG2 481 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 USP7Q93009 1102 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 MMP19Q99542 508 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 PCGF6Q9BYE7 350 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 KCNF1Q9H3M0 494 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 SLC52A1Q9NWF4 448 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 SAMD15Q9P1V8 674 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 TMEFF2Q9UIK5 374 aaPredicted RBP6.98□□□□□ -1.29
UPF3B-203ENST00000478840 PCDHA8Q9Y5H6 950 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 MEIS1O00470 390 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 NEMP1O14524 444 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 F2P00734 622 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 CKMP06732 381 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 IFNGR1P15260 489 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 ADMP35318 185 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 NEK2P51955 445 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 DSG1Q02413 1049 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 CLEC16AQ2KHT3 1053 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 MTDHQ86UE4 582 aaKnown RBP6.97□□□□□ -1.29
UPF3B-203ENST00000478840 CCDC103Q8IW40 242 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 LINC00116Q8NCU8 138 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 DCAF5Q96JK2 942 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 CELF4Q9BZC1 486 aaKnown RBP6.97□□□□□ -1.29
UPF3B-203ENST00000478840 TRIT1Q9H3H1 467 aaKnown RBP6.97□□□□□ -1.29
UPF3B-203ENST00000478840 GPRC5CQ9NQ84 441 aa6.97□□□□□ -1.29
UPF3B-203ENST00000478840 TRBV23OR9-2A0A075B6M9 112 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 CCDC194A0A1B0GVG4 234 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 K7ESF4 209 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 TSPAN6O43657 245 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 GLRX3O76003 335 aaKnown RBP6.96□□□□□ -1.3
UPF3B-203ENST00000478840 ITGB2P05107 769 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 PLS3P13797 630 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 SEPHS1P49903 392 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 CYP27A1Q02318 531 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 RTP2Q5QGT7 225 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 TSPYL5Q86VY4 417 aaPredicted RBP6.96□□□□□ -1.3
UPF3B-203ENST00000478840 PCDH19Q8TAB3 1148 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 DIO2Q92813 273 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 TBC1D32Q96NH3 1257 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.96□□□□□ -1.3
UPF3B-203ENST00000478840 MKNK2Q9HBH9 465 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 GPATCH2Q9NW75 528 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 SPEF1Q9Y4P9 236 aa6.96□□□□□ -1.3
UPF3B-203ENST00000478840 GNAT3A8MTJ3 354 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 MSCO60682 206 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 MECP2P51608 486 aaKnown RBP6.95□□□□□ -1.3
UPF3B-203ENST00000478840 TBX4P57082 545 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 PAK1Q13153 545 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 KSR1Q8IVT5 923 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 USHBP1Q8N6Y0 703 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 SMC1BQ8NDV3 1235 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 CAMKK2Q96RR4 588 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 ALG1Q9BT22 464 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 TRIM8Q9BZR9 551 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 CRTAC1Q9NQ79 661 aa6.95□□□□□ -1.3
UPF3B-203ENST00000478840 E2F8A0AVK6 867 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 TRAF5O00463 557 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 FGF10O15520 208 aaPredicted RBP6.94□□□□□ -1.3
UPF3B-203ENST00000478840 PAMP19021 973 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 ENDOUP21128 410 aaKnown RBP6.94□□□□□ -1.3
UPF3B-203ENST00000478840 ITKQ08881 620 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 KIZQ2M2Z5 673 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 GAB4Q2WGN9 574 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 ZC3H7AQ8IWR0 971 aaKnown RBP6.94□□□□□ -1.3
UPF3B-203ENST00000478840 IGSF22Q8N9C0 903 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 RCBTB1Q8NDN9 531 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 MENTQ9BUN1 341 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 C7orf69Q9H7B7 122 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 CLEC1BQ9P126 229 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 B4GALT6Q9UBX8 382 aa6.94□□□□□ -1.3
UPF3B-203ENST00000478840 LCP1P13796 627 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 ADCYAP1R1P41586 468 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 ID4P47928 161 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 LSSP48449 732 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 OXCT1P55809 520 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 PCBP3P57721 371 aaKnown RBP6.93□□□□□ -1.3
UPF3B-203ENST00000478840 TMPRSS15P98073 1019 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 PPP2R5AQ15172 486 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 SKOR2Q2VWA4 1001 aaPredicted RBP6.93□□□□□ -1.3
UPF3B-203ENST00000478840 SYDE2Q5VT97 1194 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 THAP5Q7Z6K1 395 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 CNTD1Q8N815 330 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 TSR2Q969E8 191 aaKnown RBP6.93□□□□□ -1.3
UPF3B-203ENST00000478840 CHMP4CQ96CF2 233 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 MTMR8Q96EF0 704 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 CCDC136Q96JN2 1154 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 RAXQ9Y2V3 346 aa6.93□□□□□ -1.3
UPF3B-203ENST00000478840 SHTN1A0MZ66 631 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 HMX2A2RU54 273 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 ZNF891A8MT65 544 aaPredicted RBP6.92□□□□□ -1.3
UPF3B-203ENST00000478840 FAM155AB1AL88 458 aaPredicted RBP6.92□□□□□ -1.3
UPF3B-203ENST00000478840 M0R2C6 588 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 GABRDO14764 452 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 KIF3BO15066 747 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 AKAP10O43572 662 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 PRC1O43663 620 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 FKBP9O95302 570 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 IGHA1P01876 353 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 GSTM1P09488 218 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 PYGMP11217 842 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms