RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 EPOPA6NHQ4 379 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 KIF28PB7ZC32 967 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 RNF113AO15541 343 aaKnown RBP20.4■□□□□ 0.86
VIM-204ENST00000478746 GPAA1O43292 621 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 SMARCA5O60264 1052 aaPredicted RBP20.4■□□□□ 0.86
VIM-204ENST00000478746 PLA2G6O60733 806 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 SNAP25P60880 206 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 HNRNPUQ00839 825 aaKnown RBP eCLIP20.4■□□□□ 0.86
VIM-204ENST00000478746 PDE4BQ07343 736 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 TMEM31Q5JXX7 168 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 NSMFQ6X4W1 530 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 HLA-CQ95604 372 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 GPHNQ9NQX3 736 aaPredicted RBP20.4■□□□□ 0.86
VIM-204ENST00000478746 ECHDC1Q9NTX5 307 aa20.4■□□□□ 0.86
VIM-204ENST00000478746 MYL3P08590 195 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 RFC2P35250 354 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 TAP1Q03518 808 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 RCSD1Q6JBY9 416 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 KCTD1Q719H9 257 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 IFNL3Q8IZI9 196 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 RETREG2Q8NC44 543 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 MORC4Q8TE76 937 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 PURBQ96QR8 312 aaKnown RBP20.39■□□□□ 0.85
VIM-204ENST00000478746 WDR11Q9BZH6 1224 aa20.39■□□□□ 0.85
VIM-204ENST00000478746 FTOQ9C0B1 505 aaKnown RBP eCLIP20.39■□□□□ 0.85
VIM-204ENST00000478746 PLIN4Q96Q06 1357 aa20.38■□□□□ 0.85
VIM-204ENST00000478746 SCN5AQ14524 2016 aa20.38■□□□□ 0.85
VIM-204ENST00000478746 ZFYP08048 801 aaPredicted RBP20.38■□□□□ 0.85
VIM-204ENST00000478746 SLC3A2P08195 630 aaKnown RBP20.38■□□□□ 0.85
VIM-204ENST00000478746 CPT1AP50416 773 aa20.38■□□□□ 0.85
VIM-204ENST00000478746 PURAQ00577 322 aaKnown RBP20.38■□□□□ 0.85
VIM-204ENST00000478746 FAM47CQ5HY64 1035 aa20.38■□□□□ 0.85
VIM-204ENST00000478746 MTG1Q9BT17 334 aaPredicted RBP20.38■□□□□ 0.85
VIM-204ENST00000478746 NACAP1Q9BZK3 213 aa20.38■□□□□ 0.85
VIM-204ENST00000478746 CHMP4BQ9H444 224 aaKnown RBP20.38■□□□□ 0.85
VIM-204ENST00000478746 CCPG1Q9ULG6 757 aa20.38■□□□□ 0.85
VIM-204ENST00000478746 PRR12Q9ULL5 1215 aa20.38■□□□□ 0.85
VIM-204ENST00000478746 IQCF3P0C7M6 154 aa20.37■□□□□ 0.85
VIM-204ENST00000478746 NBPF20Q3BBV1 942 aa20.37■□□□□ 0.85
VIM-204ENST00000478746 PPP4R3BQ5MIZ7 849 aa20.37■□□□□ 0.85
VIM-204ENST00000478746 HERC6Q8IVU3 1022 aa20.37■□□□□ 0.85
VIM-204ENST00000478746 ADD3Q9UEY8 706 aaKnown RBP20.37■□□□□ 0.85
VIM-204ENST00000478746 LRRC37A2A6NM11 1700 aa20.36■□□□□ 0.85
VIM-204ENST00000478746 M0R2C6 588 aa20.36■□□□□ 0.85
VIM-204ENST00000478746 GRB10Q13322 594 aa20.36■□□□□ 0.85
VIM-204ENST00000478746 BAATQ14032 418 aaPredicted RBP20.36■□□□□ 0.85
VIM-204ENST00000478746 BRDTQ58F21 947 aaPredicted RBP20.36■□□□□ 0.85
VIM-204ENST00000478746 OR6J1Q8NGC5 347 aa20.36■□□□□ 0.85
VIM-204ENST00000478746 PITPNM1O00562 1244 aa20.35■□□□□ 0.85
VIM-204ENST00000478746 GPR37L1O60883 481 aa20.35■□□□□ 0.85
VIM-204ENST00000478746 ARHGEF15O94989 841 aa20.35■□□□□ 0.85
VIM-204ENST00000478746 ALDH5A1P51649 535 aaPredicted RBP20.35■□□□□ 0.85
VIM-204ENST00000478746 STX8Q9UNK0 236 aa20.35■□□□□ 0.85
VIM-204ENST00000478746 RBM47A0AV96 593 aaKnown RBP20.34■□□□□ 0.85
VIM-204ENST00000478746 ICAM1P05362 532 aa20.34■□□□□ 0.85
VIM-204ENST00000478746 BFSP2Q13515 415 aa20.34■□□□□ 0.85
VIM-204ENST00000478746 NFRKBQ6P4R8 1299 aa20.34■□□□□ 0.85
VIM-204ENST00000478746 PPP1R13LQ8WUF5 828 aa20.34■□□□□ 0.85
VIM-204ENST00000478746 GPATCH3Q96I76 525 aa20.34■□□□□ 0.85
VIM-204ENST00000478746 NAPBQ9H115 298 aa20.34■□□□□ 0.85
VIM-204ENST00000478746 MTMR7Q9Y216 660 aa20.34■□□□□ 0.85
VIM-204ENST00000478746 LOC102724159A0A0B4J2E5 919 aa20.33■□□□□ 0.85
VIM-204ENST00000478746 KPNA6O60684 536 aa20.33■□□□□ 0.85
VIM-204ENST00000478746 PPARAQ07869 468 aa20.33■□□□□ 0.85
VIM-204ENST00000478746 PWP2Q15269 919 aaKnown RBP20.33■□□□□ 0.85
VIM-204ENST00000478746 LRRFIP1Q32MZ4 808 aaKnown RBP20.33■□□□□ 0.85
VIM-204ENST00000478746 KHSRPQ92945 711 aaKnown RBP eCLIP20.33■□□□□ 0.85
VIM-204ENST00000478746 NOD1Q9Y239 953 aa20.33■□□□□ 0.85
VIM-204ENST00000478746 RAD50Q92878 1312 aa20.32■□□□□ 0.84
VIM-204ENST00000478746 PTPDC1A2A3K4 754 aa20.32■□□□□ 0.84
VIM-204ENST00000478746 TSPY2A6NKD2 308 aa20.32■□□□□ 0.84
VIM-204ENST00000478746 NKRFO15226 690 aaKnown RBP eCLIP20.32■□□□□ 0.84
VIM-204ENST00000478746 LPXNO60711 386 aa20.32■□□□□ 0.84
VIM-204ENST00000478746 BAIAP3O94812 1187 aa20.32■□□□□ 0.84
VIM-204ENST00000478746 KCNJ6P48051 423 aa20.32■□□□□ 0.84
VIM-204ENST00000478746 PTPN11Q06124 597 aaPredicted RBP20.32■□□□□ 0.84
VIM-204ENST00000478746 LMCD1Q9NZU5 365 aa20.32■□□□□ 0.84
VIM-204ENST00000478746 LCTP09848 1927 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 FAM86C2PA6NEL3 165 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 NMT2O60551 498 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 CCDC96Q2M329 555 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 TSHZ3Q63HK5 1081 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 RASGRP2Q7LDG7 609 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 TET1Q8NFU7 2136 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 SEC62Q99442 399 aaKnown RBP20.31■□□□□ 0.84
VIM-204ENST00000478746 ZBED2Q9BTP6 218 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 RANBP17Q9H2T7 1088 aaKnown RBP20.31■□□□□ 0.84
VIM-204ENST00000478746 C11orf16Q9NQ32 467 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 IL17RBQ9NRM6 502 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 SCN10AQ9Y5Y9 1956 aa20.31■□□□□ 0.84
VIM-204ENST00000478746 A6NJR5 290 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 PI4K2BG5E9Z4 385 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 NFIBO00712 420 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 SLC16A2P36021 539 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 CHMP4BP1P59074 171 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 PDE4DQ08499 809 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 PPP2R5BQ15173 497 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 SPRED2Q7Z698 418 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 DCAF4Q8WV16 495 aa20.3■□□□□ 0.84
VIM-204ENST00000478746 INCENPQ9NQS7 918 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms