RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	NKX3-2	P78367	333 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	ZP2	Q05996	745 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	KCTD2	Q14681	263 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	RAB3GAP1	Q15042	981 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	GNAS	Q5JWF2	1037 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	WWC1	Q8IX03	1113 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	NEK9	Q8TD19	979 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	TGFBRAP1	Q8WUH2	860 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	MRGPRX2	Q96LB1	330 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	AGBL1	Q96MI9	1066 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	FAM50B	Q9Y247	325 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	FANCI	Q9NVI1	1328 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	AXIN1	O15169	862 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	CABYR	O75952	493 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	JUND	P17535	347 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	IL15	P40933	162 aa	Predicted RBP	8.8	□□□□□ -1
HDAC9-223	ENST00000476135	ABCB5	Q2M3G0	1257 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	CTC1	Q2NKJ3	1217 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	HERC4	Q5GLZ8	1057 aa	Predicted RBP	8.8	□□□□□ -1
HDAC9-223	ENST00000476135	MAMDC4	Q6UXC1	1216 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	HERC6	Q8IVU3	1022 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	SNIP1	Q8TAD8	396 aa	Known RBP	8.8	□□□□□ -1
HDAC9-223	ENST00000476135	SCLY	Q96I15	445 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	TANGO6	Q9C0B7	1094 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	SIL1	Q9H173	461 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	CABP5	Q9NP86	173 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	AATF	Q9NY61	560 aa	Known RBP eCLIP	8.8	□□□□□ -1
HDAC9-223	ENST00000476135	RAI14	Q9P0K7	980 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	HMG20B	Q9P0W2	317 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	KMT2E	Q8IZD2	1858 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	TRIO	O75962	3097 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	CACNA1B	Q00975	2339 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	MYH1	P12882	1939 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	PARP14	Q460N5	1801 aa		8.8	□□□□□ -1
HDAC9-223	ENST00000476135	TECTA	O75443	2155 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	PLXNA3	P51805	1871 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	PROB1	E7EW31	1015 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	CTAGE5	O15320	804 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	ZMYND10	O75800	440 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	SNAI1	O95863	264 aa	Predicted RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	SMPD1	P17405	629 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	COPB2	P35606	906 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	SMCP	P49901	116 aa	Predicted RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	TIMM10	P62072	90 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	EXOSC9	Q06265	439 aa	Known RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	ITGA7	Q13683	1181 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	MVP	Q14764	893 aa	Known RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	CERKL	Q49MI3	558 aa	Predicted RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	TBC1D9	Q6ZT07	1266 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	RIOX2	Q8IUF8	465 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	ADHFE1	Q8IWW8	467 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	SPATA5	Q8NB90	893 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	GDPD5	Q8WTR4	605 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	EDA	Q92838	391 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	ATG4C	Q96DT6	458 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	USP44	Q9H0E7	712 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	EHD4	Q9H223	541 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	SAP30BP	Q9UHR5	308 aa	Known RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	ZHX1	Q9UKY1	873 aa	Predicted RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	PCDHGC3	Q9UN70	934 aa		8.79	□□□□□ -1
HDAC9-223	ENST00000476135	COL11A1	P12107	1806 aa	Predicted RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	PTPRZ1	P23471	2315 aa	Predicted RBP	8.79	□□□□□ -1
HDAC9-223	ENST00000476135	SCN5A	Q14524	2016 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	ADCY6	O43306	1168 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	B4GALT4	O60513	344 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	FDX1	P10109	184 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	GUCY1A2	P33402	732 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	RFC2	P35250	354 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	IRS1	P35568	1242 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	ID4	P47928	161 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	SKOR1	P84550	965 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	ACVR2B	Q13705	512 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	TMEM132B	Q14DG7	1078 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	SPRED2	Q7Z698	418 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	RETREG3	Q86VR2	466 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	SUGP1	Q8IWZ8	645 aa	Known RBP	8.78	□□□□□ -1
HDAC9-223	ENST00000476135	PBXIP1	Q96AQ6	731 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	XAGE2	Q96GT9	111 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	TRPV6	Q9H1D0	765 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	SUGCT	Q9HAC7	445 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	FAM86C1	Q9NVL1	165 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	LRP2BP	Q9P2M1	347 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	SERPINB13	Q9UIV8	391 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	ADAMTS5	Q9UNA0	930 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	PTPRS	Q13332	1948 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	GRIN2D	O15399	1336 aa		8.78	□□□□□ -1
HDAC9-223	ENST00000476135	SI	P14410	1827 aa		8.77	□□□□□ -1
HDAC9-223	ENST00000476135	DCHS1	Q96JQ0	3298 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135		A0A1B0GUL7	405 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135		A0A1W2PRG0	241 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135	TMEM221	A6NGB7	291 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135		J3QL48	77 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135		M0R296	226 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135	FLOT1	O75955	427 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135	KRT37	O76014	449 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135	ERVK-21	P61565	698 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135	CCDC144B	Q3MJ40	725 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135	NAA16	Q6N069	864 aa	Predicted RBP	8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135	CXCL17	Q6UXB2	119 aa		8.77	□□□□□ -1.01
HDAC9-223	ENST00000476135	DEFB128	Q7Z7B8	93 aa		8.77	□□□□□ -1.01

Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms