RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 ITGB8P26012 769 aa23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 CALML3P27482 149 aa23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 FPGSQ05932 587 aa23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 C9orf50Q5SZB4 431 aa23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 KIAA1211Q6ZU35 1233 aa23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 PURBQ96QR8 312 aaKnown RBP23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 PDGFCQ9NRA1 345 aa23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 TBX21Q9UL17 535 aa23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 TNKSO95271 1327 aa23.82■■□□□ 1.4
PDLIM4-206ENST00000474421 TIMP1P01033 207 aa23.81■■□□□ 1.4
PDLIM4-206ENST00000474421 GSPT1P15170 499 aaKnown RBP23.81■■□□□ 1.4
PDLIM4-206ENST00000474421 RPS6P62753 249 aaKnown RBP23.81■■□□□ 1.4
PDLIM4-206ENST00000474421 BEX3Q00994 111 aa23.81■■□□□ 1.4
PDLIM4-206ENST00000474421 DUSP28Q4G0W2 176 aa23.81■■□□□ 1.4
PDLIM4-206ENST00000474421 SLC30A10Q6XR72 485 aa23.81■■□□□ 1.4
PDLIM4-206ENST00000474421 RGS22Q8NE09 1264 aa23.81■■□□□ 1.4
PDLIM4-206ENST00000474421 DNERQ8NFT8 737 aa23.81■■□□□ 1.4
PDLIM4-206ENST00000474421 PARP1P09874 1014 aaKnown RBP23.8■■□□□ 1.4
PDLIM4-206ENST00000474421 UBA5Q9GZZ9 404 aa23.8■■□□□ 1.4
PDLIM4-206ENST00000474421 STXBP5LQ9Y2K9 1186 aa23.8■■□□□ 1.4
PDLIM4-206ENST00000474421 DDX49Q9Y6V7 483 aaKnown RBP23.8■■□□□ 1.4
PDLIM4-206ENST00000474421 MYH6P13533 1939 aa23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 SMAD3P84022 425 aaKnown RBP23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 PDE4DQ08499 809 aa23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 TRDNQ13061 729 aa23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 CDC37Q16543 378 aaPredicted RBP23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 USH1GQ495M9 461 aa23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 IFIT1BQ5T764 474 aaKnown RBP23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 CXCL17Q6UXB2 119 aa23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 FAM126BQ8IXS8 530 aa23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 WDR11Q9BZH6 1224 aa23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 U3KPZ7 1027 aaPredicted RBP23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 ABCB11O95342 1321 aa23.79■■□□□ 1.4
PDLIM4-206ENST00000474421 RBM47A0AV96 593 aaKnown RBP23.78■■□□□ 1.4
PDLIM4-206ENST00000474421 ZNF697Q5TEC3 545 aa23.78■■□□□ 1.4
PDLIM4-206ENST00000474421 MFSD5Q6N075 450 aa23.78■■□□□ 1.4
PDLIM4-206ENST00000474421 ADGRF4Q8IZF3 695 aa23.78■■□□□ 1.4
PDLIM4-206ENST00000474421 SLC43A3Q8NBI5 491 aa23.78■■□□□ 1.4
PDLIM4-206ENST00000474421 RNPC3Q96LT9 517 aaKnown RBP23.78■■□□□ 1.4
PDLIM4-206ENST00000474421 IL25Q9H293 177 aa23.78■■□□□ 1.4
PDLIM4-206ENST00000474421 NKRFO15226 690 aaKnown RBP eCLIP23.77■■□□□ 1.4
PDLIM4-206ENST00000474421 CHMLP26374 656 aa23.77■■□□□ 1.4
PDLIM4-206ENST00000474421 IRX6P78412 446 aaPredicted RBP23.77■■□□□ 1.4
PDLIM4-206ENST00000474421 ITGA7Q13683 1181 aa23.77■■□□□ 1.4
PDLIM4-206ENST00000474421 MCF2L2Q86YR7 1114 aa23.77■■□□□ 1.4
PDLIM4-206ENST00000474421 CPVLQ9H3G5 476 aa23.77■■□□□ 1.4
PDLIM4-206ENST00000474421 DHX16O60231 1041 aaKnown RBP23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 CD4P01730 458 aa23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 EDNRBP24530 442 aa23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 CPT1AP50416 773 aa23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 PPIGQ13427 754 aaKnown RBP eCLIP23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 BRDTQ58F21 947 aaPredicted RBP23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 TMEM199Q8N511 208 aa23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 SCFD2Q8WU76 684 aa23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 POLR3EQ9NVU0 708 aa23.76■■□□□ 1.39
PDLIM4-206ENST00000474421 EPHB4P54760 987 aa23.75■■□□□ 1.39
PDLIM4-206ENST00000474421 PPP2R5BQ15173 497 aa23.75■■□□□ 1.39
PDLIM4-206ENST00000474421 SLC17A8Q8NDX2 589 aa23.75■■□□□ 1.39
PDLIM4-206ENST00000474421 MRPL11Q9Y3B7 192 aaKnown RBP23.75■■□□□ 1.39
PDLIM4-206ENST00000474421 QRICH1Q2TAL8 776 aa23.74■■□□□ 1.39
PDLIM4-206ENST00000474421 FBXO11Q86XK2 927 aa23.74■■□□□ 1.39
PDLIM4-206ENST00000474421 PTGS1P23219 599 aa23.73■■□□□ 1.39
PDLIM4-206ENST00000474421 SEC23AQ15436 765 aa23.73■■□□□ 1.39
PDLIM4-206ENST00000474421 TMEM63BQ5T3F8 832 aa23.73■■□□□ 1.39
PDLIM4-206ENST00000474421 OR6J1Q8NGC5 347 aa23.73■■□□□ 1.39
PDLIM4-206ENST00000474421 NSUN6Q8TEA1 469 aaKnown RBP23.73■■□□□ 1.39
PDLIM4-206ENST00000474421 JMJD4Q9H9V9 463 aa23.73■■□□□ 1.39
PDLIM4-206ENST00000474421 GPHNQ9NQX3 736 aaPredicted RBP23.73■■□□□ 1.39
PDLIM4-206ENST00000474421 ERICH2A1L162 156 aa23.72■■□□□ 1.39
PDLIM4-206ENST00000474421 KPNA6O60684 536 aa23.72■■□□□ 1.39
PDLIM4-206ENST00000474421 TTLL4Q14679 1199 aa23.72■■□□□ 1.39
PDLIM4-206ENST00000474421 SART3Q15020 963 aaKnown RBP23.72■■□□□ 1.39
PDLIM4-206ENST00000474421 CYB5R4Q7L1T6 521 aa23.72■■□□□ 1.39
PDLIM4-206ENST00000474421 RALYLQ86SE5 291 aaKnown RBP23.72■■□□□ 1.39
PDLIM4-206ENST00000474421 VAT1LQ9HCJ6 419 aa23.72■■□□□ 1.39
PDLIM4-206ENST00000474421 GRIN2DO15399 1336 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 TMEM265A0A087WTH1 108 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 KLRF2D3W0D1 207 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 SGSM2O43147 1006 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 CYP21A2P08686 494 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 PTH1RQ03431 593 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 SYTL5Q8TDW5 730 aaPredicted RBP23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 GUCD1Q96NT3 240 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 IWS1Q96ST2 819 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 AMNQ9BXJ7 453 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 PPP1R12CQ9BZL4 782 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 HIPK3Q9H422 1215 aa23.71■■□□□ 1.39
PDLIM4-206ENST00000474421 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 TXNP10599 105 aaKnown RBP23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 CSF2RAP15509 400 aa23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 PURAQ00577 322 aaKnown RBP23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 TRAF1Q13077 416 aa23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 PSRC1Q6PGN9 363 aaPredicted RBP23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 NCOA7Q8NI08 942 aa23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 FAM161BQ96MY7 647 aa23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 MTG1Q9BT17 334 aaPredicted RBP23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 SEMA6BQ9H3T3 888 aa23.7■■□□□ 1.38
PDLIM4-206ENST00000474421 PALM3A6NDB9 673 aaPredicted RBP23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms