RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	STAG2	Q8N3U4	1231 aa		13.4	□□□□□ -0.26
CPNE1-222	ENST00000473373	MTMR10	Q9NXD2	777 aa		13.4	□□□□□ -0.26
CPNE1-222	ENST00000473373	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.4	□□□□□ -0.26
CPNE1-222	ENST00000473373	DUSP11	O75319	330 aa	Known RBP	13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	CFB	P00751	764 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	IGHA2	P01877	340 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	COL6A1	P12109	1028 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	KIF5B	P33176	963 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	RPS6	P62753	249 aa	Known RBP	13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	TRAF1	Q13077	416 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	PCSK9	Q8NBP7	692 aa	Known RBP	13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	PURB	Q96QR8	312 aa	Known RBP	13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	AMN	Q9BXJ7	453 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	STARD7	Q9NQZ5	370 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	STXBP5L	Q9Y2K9	1186 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	TAF6L	Q9Y6J9	622 aa		13.39	□□□□□ -0.27
CPNE1-222	ENST00000473373	ZEB2	O60315	1214 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	MDM2	Q00987	491 aa	Predicted RBP	13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	GRM4	Q14833	912 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	GNAS	Q5JWF2	1037 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	SLC39A5	Q6ZMH5	540 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	TLK2	Q86UE8	772 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	ZNF654	Q8IZM8	581 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	TMTC2	Q8N394	836 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	TMEM87B	Q96K49	555 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	FGD4	Q96M96	766 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	GLT1D1	Q96MS3	346 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	JMJD4	Q9H9V9	463 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	VTA1	Q9NP79	307 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	SEC63	Q9UGP8	760 aa	Known RBP	13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	MAD2L2	Q9UI95	211 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	DDX49	Q9Y6V7	483 aa	Known RBP	13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373	LAMA3	Q16787	3333 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373		A0A0C4DFX4	3053 aa		13.38	□□□□□ -0.27
CPNE1-222	ENST00000473373		A0A1W2PQ45	241 aa	Predicted RBP	13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373		A0A1W2PQY0	241 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	MOXD2P	A6NHM9	499 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	ZBTB5	O15062	677 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	KCNA10	Q16322	511 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	TRIM60	Q495X7	471 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	ARHGEF16	Q5VV41	709 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	DNER	Q8NFT8	737 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	CLEC4D	Q8WXI8	215 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	MYL10	Q9BUA6	226 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	LRRC2	Q9BYS8	371 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	PPP4R2	Q9NY27	417 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	PHF24	Q9UPV7	400 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	PCDHA1	Q9Y5I3	950 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	SLC12A7	Q9Y666	1083 aa		13.37	□□□□□ -0.27
CPNE1-222	ENST00000473373	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	DYNC1LI2	O43237	492 aa	Predicted RBP	13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	PQBP1	O60828	265 aa	Known RBP	13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	DDAH1	O94760	285 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	REC8	O95072	547 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	CALM1	P0DP23	149 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	CALM2	P0DP24	149 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	CALM3	P0DP25	149 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	GNAQ	P50148	359 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	ACLY	P53396	1101 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	ANTXR2	P58335	489 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	BEX3	Q00994	111 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	KRT32	Q14532	448 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	PPP2R5B	Q15173	497 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	NECTIN1	Q15223	517 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	BRDT	Q58F21	947 aa	Predicted RBP	13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	IQSEC1	Q6DN90	963 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	RAB11FIP4	Q86YS3	637 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	RRP36	Q96EU6	259 aa	Known RBP	13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	NEK1	Q96PY6	1258 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	PIGS	Q96S52	555 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	TSEN34	Q9BSV6	310 aa	Known RBP	13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	LY9	Q9HBG7	655 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	SENP2	Q9HC62	589 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	GPHN	Q9NQX3	736 aa	Predicted RBP	13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	FOXD4L1	Q9NU39	408 aa		13.36	□□□□□ -0.27
CPNE1-222	ENST00000473373	LTBP2	Q14767	1821 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	LOC102724159	A0A0B4J2E5	919 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	PALM3	A6NDB9	673 aa	Predicted RBP	13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	DCDC2C	A8MYV0	355 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	ADAMTS4	O75173	837 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	ASGR1	P07306	291 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	RXRA	P19793	462 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	PWP2	Q15269	919 aa	Known RBP	13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	MICU3	Q86XE3	530 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	OR6J1	Q8NGC5	347 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	IGDCC4	Q8TDY8	1250 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	NSUN6	Q8TEA1	469 aa	Known RBP	13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	FAM161B	Q96MY7	647 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	RMDN3	Q96TC7	470 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	MTA3	Q9BTC8	594 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	WDR11	Q9BZH6	1224 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	PDGFC	Q9NRA1	345 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	MROH7	Q68CQ1	1323 aa		13.35	□□□□□ -0.27
CPNE1-222	ENST00000473373	PNMA6F	A0A0J9YX94	578 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	MYADML2	A6NDP7	307 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	SH2B2	O14492	632 aa	Predicted RBP	13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	TLR3	O15455	904 aa	Known RBP	13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	MYCL	P12524	364 aa	Predicted RBP	13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	SMPD1	P17405	629 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms