RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 ACTN1P12814 892 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 KCTD21Q4G0X4 260 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 SDE2Q6IQ49 451 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 JARID2Q92833 1246 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CCDC90BQ9GZT6 254 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 RIC8AQ9NPQ8 531 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 ITM2BQ9Y287 266 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 ANP32DO95626 131 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 BRD1O95696 1058 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 DLGAP3O95886 979 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 ATG16L1Q676U5 607 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 NCAPH2Q6IBW4 605 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 USHBP1Q8N6Y0 703 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CHMP6Q96FZ7 201 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CACYBPQ9HB71 228 aaKnown RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 NLRP2Q9NX02 1062 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CTNND2Q9UQB3 1225 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CCDC18Q5T9S5 1454 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CARMIL2Q6F5E8 1435 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 RABGAP1LQ5R372 815 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 SWT1Q5T5J6 900 aaKnown RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 MICU3Q86XE3 530 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 TERB1Q8NA31 727 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 GPT2Q8TD30 523 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 PSPC1Q8WXF1 523 aaKnown RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CCDC28BQ9BUN5 200 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 ZFYVE1Q9HBF4 777 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 RNF14Q9UBS8 474 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 ZFP69BQ9UJL9 534 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 ATP8A1Q9Y2Q0 1164 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 HSPA8P11142 646 aaKnown RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 ART3Q13508 389 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 R3HDM1Q15032 1099 aaKnown RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CNGA3Q16281 694 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 CCDC84Q86UT8 332 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 TRIM50Q86XT4 487 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 GABPB2Q8TAK5 448 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 ASZ1Q8WWH4 475 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 RAPGEF5Q92565 580 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 SKA1Q96BD8 255 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 EPN3Q9H201 632 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 EPN1Q9Y6I3 576 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 GOLGA8JA6NMD2 632 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 PRR23D1E9PI22 279 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 GOLGA8TH3BQL2 631 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 ASNA1O43681 348 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 HAUS5O94927 633 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 GOLGA8HP0CJ92 632 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 PRR23D2P0DMB1 279 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 SF3B3Q15393 1217 aaKnown RBP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 PACS2Q86VP3 889 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 AGGF1Q8N302 714 aaeCLIP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 NEK9Q8TD19 979 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 EZH1Q92800 747 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 PCDHB15Q9Y5E8 787 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 RNF103-CHMP3A0A140T963 221 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 TRIM37O94972 964 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 MFN2O95140 757 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 KRT20P35900 424 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 FCHO2Q0JRZ9 810 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 SPATA1Q5VX52 437 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 MRPL40Q9NQ50 206 aaKnown RBP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 NUTM2FA1L443 756 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 SERPINB2P05120 415 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 RBM5P52756 815 aaKnown RBP eCLIP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 NUTM2GQ5VZR2 741 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 EXOC8Q8IYI6 725 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 GRK7Q8WTQ7 553 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 DDI1Q8WTU0 396 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 ATF3P18847 181 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 VHLP40337 213 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 RECQLP46063 649 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 BTKQ06187 659 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 SLC9A5Q14940 896 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 RSBN1Q5VWQ0 802 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 PARD3BQ8TEW8 1205 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 ZNF473Q8WTR7 871 aaKnown RBP9.75□□□□□ -0.85
COL6A3-210ENST00000473258 TAB2Q9NYJ8 693 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 SH3GLB1Q9Y371 365 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 PPME1Q9Y570 386 aa9.75□□□□□ -0.85
COL6A3-210ENST00000473258 KLF18A0A0U1RQI7 1052 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 ADRM1Q16186 407 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 THOC7Q6I9Y2 204 aaKnown RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 GDAP1Q8TB36 358 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 NAF1Q96HR8 494 aaKnown RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 TCEANC2Q96MN5 208 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 USP26Q9BXU7 913 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 SEL1LQ9UBV2 794 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 RABGEF1Q9UJ41 708 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 AGTPBP1Q9UPW5 1226 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 TRIM64CA6NLI5 447 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 M0R3G1 203 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 CFLARO15519 480 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 OCM2P0CE71 109 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 OCMP0CE72 109 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 CCNCP24863 283 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 ATP6V1E1P36543 226 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 ADCY8P40145 1251 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 KLHL30Q0D2K2 578 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 RNF207Q6ZRF8 634 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms