RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 PCDHA1Q9Y5I3 950 aa12.18□□□□□ -0.46
SMARCD3-208ENST00000472789 PLXNB2O15031 1838 aa12.18□□□□□ -0.46
SMARCD3-208ENST00000472789 PFASO15067 1338 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 POTEB2H3BUK9 544 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 NFIBO00712 420 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 LARGE1O95461 756 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 HMGCRP04035 888 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 XRCC5P13010 732 aaKnown RBP12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 CALML3P27482 149 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 CDC27P30260 824 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 AKAP17AQ02040 695 aaKnown RBP12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 TRAF1Q13077 416 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 MFSD14CQ5VZR4 134 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 TRMT44Q8IYL2 757 aaKnown RBP12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 TRIM22Q8IYM9 498 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 PXYLP1Q8TE99 480 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 WASF1Q92558 559 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 ARMC5Q96C12 935 aa12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 NCOA5Q9HCD5 579 aaKnown RBP12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 A1CFQ9NQ94 594 aaKnown RBP12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 MRPL11Q9Y3B7 192 aaKnown RBP12.17□□□□□ -0.46
SMARCD3-208ENST00000472789 PPP1R11O60927 126 aaPredicted RBP12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 PPFIA3O75145 1194 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 HOXC6P09630 235 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 SMARCA1P28370 1054 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 GJB2P29033 226 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 CYP2C19P33261 490 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 ADD1P35611 737 aaKnown RBP12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 CNTN2Q02246 1040 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 BAATQ14032 418 aaPredicted RBP12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 RNF207Q6ZRF8 634 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 HEATR3Q7Z4Q2 680 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 MCF2L2Q86YR7 1114 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 CLEC4DQ8WXI8 215 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 MTMR8Q96EF0 704 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 TMEM106CQ9BVX2 250 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 FLRT1Q9NZU1 646 aa12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 RBM27Q9P2N5 1060 aaKnown RBP12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 V9GY48 417 aaPredicted RBP12.16□□□□□ -0.46
SMARCD3-208ENST00000472789 SMCHD1A6NHR9 2005 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 CFBP00751 764 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 PRKAR2AP13861 404 aaKnown RBP12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 SSRP1Q08945 709 aaKnown RBP12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 TRIM32Q13049 653 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 ZNF792Q3KQV3 632 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 LARP1BQ659C4 914 aaKnown RBP12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 SLC30A10Q6XR72 485 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 RGS22Q8NE09 1264 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 MAML3Q96JK9 1138 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 ZNF333Q96JL9 665 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 RNF208Q9H0X6 261 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 FAM217BQ9NTX9 383 aaPredicted RBP12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 CYP39A1Q9NYL5 469 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 ATP6V1DQ9Y5K8 247 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 NID2Q14112 1375 aa12.15□□□□□ -0.46
SMARCD3-208ENST00000472789 CNTNAP5Q8WYK1 1306 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 MYH6P13533 1939 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 H3BQV1 296 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 CCL5P13501 91 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 IFNAR1P17181 557 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 XBP1P17861 261 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 CNGA1P29973 690 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 RPS6P62753 249 aaKnown RBP12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 MTFR1Q15390 333 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 OLFML2BQ68BL8 750 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 NSUN7Q8NE18 718 aaKnown RBP12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 SMARCC2Q8TAQ2 1214 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 TBC1D5Q92609 795 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 GPKOWQ92917 476 aaPredicted RBP eCLIP12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 PHKBQ93100 1093 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 PURBQ96QR8 312 aaKnown RBP12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 SLC26A6Q9BXS9 759 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 UNC93B1Q9H1C4 597 aa12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 DIS3Q9Y2L1 958 aaKnown RBP12.14□□□□□ -0.47
SMARCD3-208ENST00000472789 DNAJC25-GNG10A0A024R161 153 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 STX6O43752 255 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 HOXA13P31271 388 aaPredicted RBP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 DDIT3P35638 169 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 NAPAP54920 295 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 CACNB2Q08289 660 aaPredicted RBP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 TRIM29Q14134 588 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 CUL5Q93034 780 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 TINF2Q9BSI4 451 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 HMX1Q9NP08 348 aaPredicted RBP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 ORC3Q9UBD5 711 aaPredicted RBP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 ADD3Q9UEY8 706 aaKnown RBP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 ZHX1Q9UKY1 873 aaPredicted RBP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 COLQQ9Y215 455 aaPredicted RBP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 CNPY2Q9Y2B0 182 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 ZNF236Q9UL36 1845 aa12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 ZNFX1Q9P2E3 1918 aaKnown RBP12.13□□□□□ -0.47
SMARCD3-208ENST00000472789 STK36Q9NRP7 1315 aa12.12□□□□□ -0.47
SMARCD3-208ENST00000472789 SOWAHBA6NEL2 793 aa12.12□□□□□ -0.47
SMARCD3-208ENST00000472789 GCOM1H8Y6P7 765 aaPredicted RBP12.12□□□□□ -0.47
SMARCD3-208ENST00000472789 DEXIO95424 95 aa12.12□□□□□ -0.47
SMARCD3-208ENST00000472789 POLR2MP0CAP2 368 aa12.12□□□□□ -0.47
SMARCD3-208ENST00000472789 FUT2Q10981 343 aa12.12□□□□□ -0.47
SMARCD3-208ENST00000472789 PRAMEF19Q5SWL8 479 aa12.12□□□□□ -0.47
SMARCD3-208ENST00000472789 WWC2Q6AWC2 1192 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms