RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 SP3Q02447 781 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 RBL2Q08999 1139 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 FILIP1LQ4L180 1135 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 CDKAL1Q5VV42 579 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 APOBEC3HQ6NTF7 200 aaKnown RBP10.77□□□□□ -0.68
HDAC3-205ENST00000469550 RAB11FIP4Q86YS3 637 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 BRI3BPQ8WY22 251 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 PUS7LQ9H0K6 701 aaKnown RBP10.77□□□□□ -0.68
HDAC3-205ENST00000469550 SERTAD1Q9UHV2 236 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 SRPRBQ9Y5M8 271 aaKnown RBP10.77□□□□□ -0.68
HDAC3-205ENST00000469550 CSADQ9Y600 493 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 POLR2DO15514 142 aaKnown RBP10.77□□□□□ -0.69
HDAC3-205ENST00000469550 ACTN4O43707 911 aaKnown RBP10.77□□□□□ -0.69
HDAC3-205ENST00000469550 FMNL1O95466 1100 aaPredicted RBP10.77□□□□□ -0.69
HDAC3-205ENST00000469550 LIFRP42702 1097 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 VSNL1P62760 191 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 SAFBQ15424 915 aaKnown RBP eCLIP10.77□□□□□ -0.69
HDAC3-205ENST00000469550 SLC9C2Q5TAH2 1124 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 CD99L2Q8TCZ2 262 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 IGDCC4Q8TDY8 1250 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 PPM1EQ8WY54 764 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 NBPF3Q9H094 633 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 FOXP1Q9H334 677 aaPredicted RBP10.77□□□□□ -0.69
HDAC3-205ENST00000469550 ZSWIM4Q9H7M6 989 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 FAM217BQ9NTX9 383 aaPredicted RBP10.77□□□□□ -0.69
HDAC3-205ENST00000469550 TMOD2Q9NZR1 351 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 CEP131Q9UPN4 1083 aa10.77□□□□□ -0.69
HDAC3-205ENST00000469550 IQSEC3Q9UPP2 1182 aaPredicted RBP10.77□□□□□ -0.69
HDAC3-205ENST00000469550 EIF3CLB5ME19 914 aaKnown RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 PPFIA4O75335 1185 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 CPP00450 1065 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 MMP1P03956 469 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 PRR29P0C7W0 189 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 IFNAR1P17181 557 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 TOB1P50616 345 aaPredicted RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 BCAMP50895 628 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 AMPD2Q01433 879 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 SSRP1Q08945 709 aaKnown RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 CUL4BQ13620 913 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 TTC31Q49AM3 519 aaPredicted RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 LRRC31Q6UY01 552 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 CYB5R4Q7L1T6 521 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 TRMT44Q8IYL2 757 aaKnown RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 SLC35F6Q8N357 371 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 WDR66Q8TBY9 1149 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 LPIN2Q92539 896 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 XAGE2Q96GT9 111 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 EIF3CQ99613 913 aaKnown RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.76□□□□□ -0.691e-6■■■■□ 19.9
HDAC3-205ENST00000469550 SNCAIPQ9Y6H5 919 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 CCL15-CCL14A0A0B4J2E2 113 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 LRRC10BA6NIK2 292 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 TEX33O43247 280 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 RANBP6O60518 1105 aaKnown RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 N4BP1O75113 896 aaKnown RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 SLC5A1P13866 664 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 TRIM14Q14142 442 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 ARHGEF6Q15052 776 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 CCL15Q16663 113 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 HSP90AA4PQ58FG1 418 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 ERO1BQ86YB8 467 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 CNKSR2Q8WXI2 1034 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 PHKBQ93100 1093 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 ZNF512BQ96KM6 892 aaPredicted RBP10.76□□□□□ -0.69
HDAC3-205ENST00000469550 FAM107BQ9H098 131 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 ZFYVE28Q9HCC9 887 aa10.76□□□□□ -0.69
HDAC3-205ENST00000469550 DOCK2Q92608 1830 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 GOLGA8AA7E2F4 631 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 ARHGAP25P42331 645 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 IRX3P78415 501 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-205ENST00000469550 CAP1Q01518 475 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 PPIL2Q13356 520 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 TAF1CQ15572 869 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-205ENST00000469550 ALX1Q15699 326 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 MAP9Q49MG5 647 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 DCAF15Q66K64 600 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 SH3RF1Q7Z6J0 888 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 TBC1D10CQ8IV04 446 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 EFCAB13Q8IY85 973 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 CCDC148Q8NFR7 591 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 RPGRIP1Q96KN7 1286 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 GSDMAQ96QA5 445 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 LY9Q9HBG7 655 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 MYO6Q9UM54 1294 aa10.75□□□□□ -0.69
HDAC3-205ENST00000469550 TARSL2A2RTX5 802 aaKnown RBP10.74□□□□□ -0.69
HDAC3-205ENST00000469550 LRRIQ3A6PVS8 624 aaPredicted RBP10.74□□□□□ -0.69
HDAC3-205ENST00000469550 GYPCP04921 128 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 RHOXF2BP0C7M4 288 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 CETPP11597 493 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 CASP14P31944 242 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 ADD2P35612 726 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 ZAP70P43403 619 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 UBE3CQ15386 1083 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 CYP26C1Q6V0L0 522 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 PLCD3Q8N3E9 789 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 OTUD5Q96G74 571 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 RHOXF2Q9BQY4 288 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 MTA3Q9BTC8 594 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 SUGCTQ9HAC7 445 aa10.74□□□□□ -0.69
HDAC3-205ENST00000469550 LIMA1Q9UHB6 759 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms