RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 PCDHB5Q9Y5E4 795 aa5.05□□□□□ -1.6
TMEM39A-204ENST00000468545 PCDHGC5Q9Y5F6 944 aa5.05□□□□□ -1.6
TMEM39A-204ENST00000468545 LAMB4A4D0S4 1761 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 MINDY4BA8MYZ0 360 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 IRS4O14654 1257 aaPredicted RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 TMPRSS2O15393 492 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 SART1O43290 800 aaKnown RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 HCLS1P14317 486 aaPredicted RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 EIF4A3P38919 411 aaKnown RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 PREPP48147 710 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 ID3Q02535 119 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 SOX4Q06945 474 aaPredicted RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 DOC2BQ14184 412 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 EPHA10Q5JZY3 1008 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 SNAP47Q5SQN1 464 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 CEP85Q6P2H3 762 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 CLEC4GQ6UXB4 293 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 PPP1R42Q7Z4L9 355 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 NBPF5PQ86XG9 351 aaPredicted RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 RPAP2Q8IXW5 612 aaPredicted RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 C12orf50Q8NA57 414 aaPredicted RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 FLAD1Q8NFF5 587 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 FAM46AQ96IP4 442 aaKnown RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 SSBP4Q9BWG4 385 aaPredicted RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 BICC1Q9H694 974 aaKnown RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 DDX41Q9UJV9 622 aaKnown RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 PCDHA4Q9UN74 947 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 AP4E1Q9UPM8 1137 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 HDAC5Q9UQL6 1122 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 PCDHGB7Q9Y5F8 929 aa5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 MYH14Q7Z406 1995 aaKnown RBP5.04□□□□□ -1.6
TMEM39A-204ENST00000468545 UBN2Q6ZU65 1347 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 PNPLA7Q6ZV29 1317 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 USP42Q9H9J4 1324 aaKnown RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 PNMA6EA0A0J9YXQ4 647 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 SRGAP3O43295 1099 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 GAS2O43903 313 aaKnown RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 HMMRO75330 724 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 SURF6O75683 361 aaKnown RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 SERPINB2P05120 415 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 PCCAP05165 728 aaPredicted RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 GYS1P13807 737 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 GARTP22102 1010 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ERCC5P28715 1186 aaPredicted RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 FAM160A1Q05DH4 1040 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 PTPN11Q06124 597 aaPredicted RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 RAD51AP2Q09MP3 1159 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 OS9Q13438 667 aaPredicted RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 NFIXQ14938 502 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 PARP10Q53GL7 1025 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ZC3H12AQ5D1E8 599 aaKnown RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 TAF7LQ5H9L4 462 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ANKRD45Q5TZF3 282 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 C9orf131Q5VYM1 1079 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 LMBR1LQ6UX01 489 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 SKAP1Q86WV1 359 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 SIRT2Q8IXJ6 389 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ZNF654Q8IZM8 581 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ANKRD44Q8N8A2 993 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ZBTB38Q8NAP3 1195 aaPredicted RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 GOLM1Q8NBJ4 401 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 UBL7Q96S82 380 aaPredicted RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 TGIF2Q9GZN2 237 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ATXN3LQ9H3M9 355 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 CRIM1Q9NZV1 1036 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ADAMTS1Q9UHI8 967 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 PA2G4Q9UQ80 394 aaKnown RBP5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 HIF3AQ9Y2N7 669 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 CACNA1FO60840 1977 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 ATP10DQ9P241 1426 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 LY75O60449 1722 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 C4BP0C0L5 1744 aa5.03□□□□□ -1.6
TMEM39A-204ENST00000468545 SH3TC1Q8TE82 1336 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 SMARCA5O60264 1052 aaPredicted RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 PDE8AO60658 829 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 NTSR2O95665 410 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 BPNT1O95861 308 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 F13A1P00488 732 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 DRD2P14416 443 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 TM4SF1P30408 202 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 RGS3P49796 1198 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 CASP7P55210 303 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 ERVK-24P63145 666 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 RACK1P63244 317 aaKnown RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 FOXO4P98177 505 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 RPL6Q02878 288 aaKnown RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 G3BP1Q13283 466 aaKnown RBP eCLIP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 HDAC1Q13547 482 aaPredicted RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 R3HDM1Q15032 1099 aaKnown RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 CCDC57Q2TAC2 916 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 FBXL19Q6PCT2 694 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 BNC2Q6ZN30 1099 aaPredicted RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 CENPQQ7L2Z9 268 aaPredicted RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 KIAA0825Q8IV33 1275 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 NLGN1Q8N2Q7 840 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 C2CD4AQ8NCU7 369 aaPredicted RBP5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 KLHDC4Q8TBB5 520 aa5.02□□□□□ -1.61
TMEM39A-204ENST00000468545 GATAD2BQ8WXI9 593 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms