RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 SOX1O00570 391 aaPredicted RBP22.26■■□□□ 1.15
COL7A1-207ENST00000467985 DHX16O60231 1041 aaKnown RBP22.26■■□□□ 1.15
COL7A1-207ENST00000467985 KIAA1211Q6ZU35 1233 aa22.26■■□□□ 1.15
COL7A1-207ENST00000467985 CENPQQ7L2Z9 268 aaPredicted RBP22.26■■□□□ 1.15
COL7A1-207ENST00000467985 FBXO16Q8IX29 292 aaPredicted RBP22.26■■□□□ 1.15
COL7A1-207ENST00000467985 NCOA7Q8NI08 942 aa22.26■■□□□ 1.15
COL7A1-207ENST00000467985 VTI1AQ96AJ9 217 aa22.26■■□□□ 1.15
COL7A1-207ENST00000467985 PURBQ96QR8 312 aaKnown RBP22.26■■□□□ 1.15
COL7A1-207ENST00000467985 A0A0U1RQG5 324 aaPredicted RBP22.25■■□□□ 1.15
COL7A1-207ENST00000467985 TRIM43BA6NCK2 446 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 E7EWF7 191 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 KIAA0355O15063 1070 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 CTAGE5O15320 804 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 ZEB2O60315 1214 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 CABYRO75952 493 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 SMPD1P17405 629 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 FSCN1Q16658 493 aaKnown RBP22.25■■□□□ 1.15
COL7A1-207ENST00000467985 EEPD1Q7L9B9 569 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 TRIM43Q96BQ3 446 aaPredicted RBP22.25■■□□□ 1.15
COL7A1-207ENST00000467985 JMJD4Q9H9V9 463 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 PDGFCQ9NRA1 345 aa22.25■■□□□ 1.15
COL7A1-207ENST00000467985 IFIT3O14879 490 aaKnown RBP22.24■■□□□ 1.15
COL7A1-207ENST00000467985 PDE4DQ08499 809 aa22.24■■□□□ 1.15
COL7A1-207ENST00000467985 DUSP28Q4G0W2 176 aa22.24■■□□□ 1.15
COL7A1-207ENST00000467985 SH3RF1Q7Z6J0 888 aa22.24■■□□□ 1.15
COL7A1-207ENST00000467985 FBXO11Q86XK2 927 aa22.24■■□□□ 1.15
COL7A1-207ENST00000467985 MCF2L2Q86YR7 1114 aa22.24■■□□□ 1.15
COL7A1-207ENST00000467985 LRCH3Q96II8 777 aa22.24■■□□□ 1.15
COL7A1-207ENST00000467985 SEZ6LQ9BYH1 1024 aa22.24■■□□□ 1.15
COL7A1-207ENST00000467985 TMEM39AQ9NV64 488 aa22.24■■□□□ 1.15
COL7A1-207ENST00000467985 MRPL11Q9Y3B7 192 aaKnown RBP22.24■■□□□ 1.15
COL7A1-207ENST00000467985 DDX49Q9Y6V7 483 aaKnown RBP22.24■■□□□ 1.15
COL7A1-207ENST00000467985 KLRF2D3W0D1 207 aa22.23■■□□□ 1.15
COL7A1-207ENST00000467985 DYNC1LI2O43237 492 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-207ENST00000467985 EDNRBP24530 442 aa22.23■■□□□ 1.15
COL7A1-207ENST00000467985 IRX5P78411 483 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-207ENST00000467985 QRICH1Q2TAL8 776 aa22.23■■□□□ 1.15
COL7A1-207ENST00000467985 BADQ92934 168 aa22.23■■□□□ 1.15
COL7A1-207ENST00000467985 WDR11Q9BZH6 1224 aa22.23■■□□□ 1.15
COL7A1-207ENST00000467985 VAT1LQ9HCJ6 419 aa22.23■■□□□ 1.15
COL7A1-207ENST00000467985 RBM8AQ9Y5S9 174 aaKnown RBP22.23■■□□□ 1.15
COL7A1-207ENST00000467985 MYH6P13533 1939 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 RBM47A0AV96 593 aaKnown RBP22.22■■□□□ 1.15
COL7A1-207ENST00000467985 ARVCFO00192 962 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 RAG1P15918 1043 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 CDK7P50613 346 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 BEX3Q00994 111 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 FAAP100Q0VG06 881 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 TRAF1Q13077 416 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 WTAPQ15007 396 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 AMNQ9BXJ7 453 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 MAD2L2Q9UI95 211 aa22.22■■□□□ 1.15
COL7A1-207ENST00000467985 PALM3A6NDB9 673 aaPredicted RBP22.21■■□□□ 1.15
COL7A1-207ENST00000467985 BMP2KLQ5H9B9 411 aa22.21■■□□□ 1.15
COL7A1-207ENST00000467985 STAG2Q8N3U4 1231 aa22.21■■□□□ 1.15
COL7A1-207ENST00000467985 SCFD2Q8WU76 684 aa22.21■■□□□ 1.15
COL7A1-207ENST00000467985 NKRFO15226 690 aaKnown RBP eCLIP22.2■■□□□ 1.14
COL7A1-207ENST00000467985 TLR3O15455 904 aaKnown RBP22.2■■□□□ 1.14
COL7A1-207ENST00000467985 GRM4Q14833 912 aa22.2■■□□□ 1.14
COL7A1-207ENST00000467985 TMEM67Q5HYA8 995 aa22.2■■□□□ 1.14
COL7A1-207ENST00000467985 CXCL17Q6UXB2 119 aa22.2■■□□□ 1.14
COL7A1-207ENST00000467985 NSUN6Q8TEA1 469 aaKnown RBP22.2■■□□□ 1.14
COL7A1-207ENST00000467985 ESYT1Q9BSJ8 1104 aa22.2■■□□□ 1.14
COL7A1-207ENST00000467985 MTA3Q9BTC8 594 aa22.2■■□□□ 1.14
COL7A1-207ENST00000467985 TAF6LQ9Y6J9 622 aa22.2■■□□□ 1.14
COL7A1-207ENST00000467985 ZBTB5O15062 677 aa22.19■■□□□ 1.14
COL7A1-207ENST00000467985 CPT1AP50416 773 aa22.19■■□□□ 1.14
COL7A1-207ENST00000467985 BRDTQ58F21 947 aaPredicted RBP22.19■■□□□ 1.14
COL7A1-207ENST00000467985 STOX1Q6ZVD7 989 aa22.19■■□□□ 1.14
COL7A1-207ENST00000467985 CATIPQ7Z7H3 387 aa22.19■■□□□ 1.14
COL7A1-207ENST00000467985 SYTL5Q8TDW5 730 aaPredicted RBP22.19■■□□□ 1.14
COL7A1-207ENST00000467985 MTMR8Q96EF0 704 aa22.19■■□□□ 1.14
COL7A1-207ENST00000467985 IWS1Q96ST2 819 aa22.19■■□□□ 1.14
COL7A1-207ENST00000467985 FPGSQ05932 587 aa22.18■■□□□ 1.14
COL7A1-207ENST00000467985 TROAPQ12815 778 aa22.18■■□□□ 1.14
COL7A1-207ENST00000467985 PPP2R5BQ15173 497 aa22.18■■□□□ 1.14
COL7A1-207ENST00000467985 MB21D2Q8IYB1 491 aaPredicted RBP22.18■■□□□ 1.14
COL7A1-207ENST00000467985 SLC43A3Q8NBI5 491 aa22.18■■□□□ 1.14
COL7A1-207ENST00000467985 LSG1Q9H089 658 aaKnown RBP22.18■■□□□ 1.14
COL7A1-207ENST00000467985 POLR3EQ9NVU0 708 aa22.18■■□□□ 1.14
COL7A1-207ENST00000467985 MAP3K20Q9NYL2 800 aaKnown RBP22.18■■□□□ 1.14
COL7A1-207ENST00000467985 TBX21Q9UL17 535 aa22.18■■□□□ 1.14
COL7A1-207ENST00000467985 COL6A3P12111 3177 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 TIMP1P01033 207 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 ITGB8P26012 769 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 ITGA7Q13683 1181 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 SHHQ15465 462 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 CASC1Q6TDU7 716 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 CHST3Q7LGC8 479 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 FAM126BQ8IXS8 530 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 SAMD3Q8N6K7 520 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 IGDCC4Q8TDY8 1250 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 RMDN3Q96TC7 470 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 RIOX1Q9H6W3 641 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 PCDHA1Q9Y5I3 950 aa22.17■■□□□ 1.14
COL7A1-207ENST00000467985 ANTXR2P58335 489 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 GHRHRQ02643 423 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 TTLL4Q14679 1199 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 TMEM63BQ5T3F8 832 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 ERICH6BQ5W0A0 696 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms