RNA–Protein interactions for RNA: ENST00000467533.5

HDAC3-203, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 663 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-203ENST00000467533 USP17L21D6R901 530 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 F5H6K3 240 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 M0R296 226 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 OAZ1P54368 228 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 KLRC3Q07444 240 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 NBPF20Q3BBV1 942 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 TCEAL5Q5H9L2 206 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 TAPT1Q6NXT6 567 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 CNKSR3Q6P9H4 555 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 C16orf86Q6ZW13 317 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 BMP8AQ7Z5Y6 402 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 RNF135Q8IUD6 432 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 FAM9BQ8IZU0 186 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 BANK1Q8NDB2 785 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 ATOH1Q92858 354 aaPredicted RBP12.3□□□□□ -0.44
HDAC3-203ENST00000467533 ARMT1Q9H993 441 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 VTA1Q9NP79 307 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 A1CFQ9NQ94 594 aaKnown RBP12.3□□□□□ -0.44
HDAC3-203ENST00000467533 RNF146Q9NTX7 359 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 ATG2AQ2TAZ0 1938 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 SPTBN4Q9H254 2564 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 ZNF532Q9HCE3 1301 aa12.3□□□□□ -0.44
HDAC3-203ENST00000467533 SURF6O75683 361 aaKnown RBP12.29□□□□□ -0.44
HDAC3-203ENST00000467533 CHMP4BP1P59074 171 aa12.29□□□□□ -0.44
HDAC3-203ENST00000467533 TTF1Q15361 905 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-203ENST00000467533 CLUL1Q15846 466 aa12.29□□□□□ -0.44
HDAC3-203ENST00000467533 C12orf60Q5U649 245 aa12.29□□□□□ -0.44
HDAC3-203ENST00000467533 NFRKBQ6P4R8 1299 aa12.29□□□□□ -0.44
HDAC3-203ENST00000467533 ERMP1Q7Z2K6 904 aa12.29□□□□□ -0.44
HDAC3-203ENST00000467533 RPAINQ86UA6 219 aa12.29□□□□□ -0.44
HDAC3-203ENST00000467533 OR6J1Q8NGC5 347 aa12.29□□□□□ -0.44
HDAC3-203ENST00000467533 AFAP1L1Q8TED9 768 aa12.29□□□□□ -0.44
HDAC3-203ENST00000467533 ZFHX2Q9C0A1 2572 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-203ENST00000467533 RALGAPA2Q2PPJ7 1873 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 PRKAB2O43741 272 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 PTPN11Q06124 597 aaPredicted RBP12.28□□□□□ -0.44
HDAC3-203ENST00000467533 DUSP28Q4G0W2 176 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 BRDTQ58F21 947 aaPredicted RBP12.28□□□□□ -0.44
HDAC3-203ENST00000467533 TRIM67Q6ZTA4 783 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 LRRC8DQ7L1W4 858 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 FBXL6Q8N531 539 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 CAGE1Q8TC20 777 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 EAF2Q96CJ1 260 aaPredicted RBP12.28□□□□□ -0.44
HDAC3-203ENST00000467533 DDRGK1Q96HY6 314 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 IRF2BPLQ9H1B7 796 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 NSUN3Q9H649 340 aaKnown RBP12.28□□□□□ -0.44
HDAC3-203ENST00000467533 ATP8A2Q9NTI2 1148 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 FEM1BQ9UK73 627 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 ISY1Q9ULR0 285 aaKnown RBP12.28□□□□□ -0.44
HDAC3-203ENST00000467533 RAD50Q92878 1312 aa12.28□□□□□ -0.44
HDAC3-203ENST00000467533 COL4A6Q14031 1691 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 ABHD14A-ACY1A0A1B0GW23 586 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 EFCAB14O75071 495 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 MBD4O95243 580 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 SLFN5Q08AF3 891 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 POLA2Q14181 598 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 SMAD2Q15796 467 aaKnown RBP12.27□□□□□ -0.45
HDAC3-203ENST00000467533 PTGISQ16647 500 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 WDR11Q9BZH6 1224 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 INSL6Q9Y581 213 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 MICAL3Q7RTP6 2002 aa12.27□□□□□ -0.45
HDAC3-203ENST00000467533 C5orf42Q9H799 3197 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 STXBP3O00186 592 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 MBTPS2O43462 519 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 ALAS1P13196 640 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 SELPP16109 830 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 GPM6BQ13491 265 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 COL19A1Q14993 1142 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 TCTN1Q2MV58 587 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 EPC2Q52LR7 807 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 SAMD11Q96NU1 681 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.26□□□□□ -0.45
HDAC3-203ENST00000467533 NYAP2Q9P242 653 aa12.26□□□□□ -0.45
HDAC3-203ENST00000467533 MYH7P12883 1935 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 TCRBV5S4A2TA0A5A2 114 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 NBNO60934 754 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 BCAR3O75815 825 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 PARNO95453 639 aaKnown RBP12.25□□□□□ -0.45
HDAC3-203ENST00000467533 CXCL10P02778 98 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 FDX1P10109 184 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 ID4P47928 161 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 VCPP55072 806 aaKnown RBP12.25□□□□□ -0.45
HDAC3-203ENST00000467533 IKQ13123 557 aaPredicted RBP12.25□□□□□ -0.45
HDAC3-203ENST00000467533 IKBKEQ14164 716 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 GPNMBQ14956 572 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 TRERF1Q96PN7 1200 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 DNAJC2Q99543 621 aaKnown RBP12.25□□□□□ -0.45
HDAC3-203ENST00000467533 CYP39A1Q9NYL5 469 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 CLIP2Q9UDT6 1046 aa12.25□□□□□ -0.45
HDAC3-203ENST00000467533 H0Y858 1186 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 H3BNC9 293 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 GOLIM4O00461 696 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 NCK2O43639 380 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 KPNA6O60684 536 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 ZXDAP98168 799 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 SMAD4Q13485 552 aaKnown RBP12.24□□□□□ -0.45
HDAC3-203ENST00000467533 TKFCQ3LXA3 575 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 NSMFQ6X4W1 530 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 ASCL5Q7RTU5 278 aa12.24□□□□□ -0.45
HDAC3-203ENST00000467533 AACSQ86V21 672 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms