RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 TRMT44Q8IYL2 757 aaKnown RBP20.62■□□□□ 0.89
COL9A3-205ENST00000466192 UPF1Q92900 1129 aaKnown RBP eCLIP20.62■□□□□ 0.897e-13■□□□□ 10.1
COL9A3-205ENST00000466192 AMNQ9BXJ7 453 aa20.62■□□□□ 0.89
COL9A3-205ENST00000466192 TECP42680 631 aa20.62■□□□□ 0.89
COL9A3-205ENST00000466192 UBASH3AP57075 661 aa20.62■□□□□ 0.89
COL9A3-205ENST00000466192 CUL4BQ13620 913 aa20.62■□□□□ 0.89
COL9A3-205ENST00000466192 TMC6Q7Z403 805 aa20.62■□□□□ 0.89
COL9A3-205ENST00000466192 MICALL2Q8IY33 904 aa20.62■□□□□ 0.89
COL9A3-205ENST00000466192 GJA3Q9Y6H8 435 aa20.62■□□□□ 0.89
COL9A3-205ENST00000466192 GTPBP6O43824 516 aaPredicted RBP20.61■□□□□ 0.89
COL9A3-205ENST00000466192 CALCRLQ16602 461 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 RRAGBQ5VZM2 374 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 SAMD7Q7Z3H4 446 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 FBXO11Q86XK2 927 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 LRRC15Q8TF66 581 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 DPF2Q92785 391 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 MED15Q96RN5 788 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 GLT8D2Q9H1C3 349 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 GOPCQ9HD26 462 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 PRR12Q9ULL5 1215 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 NFE2L3Q9Y4A8 694 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 ASTN2O75129 1339 aaPredicted RBP20.61■□□□□ 0.89
COL9A3-205ENST00000466192 TXKP42681 527 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 USH1GQ495M9 461 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 CABP7Q86V35 215 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 IGSF22Q8N9C0 903 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 RASSF8Q8NHQ8 419 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 TEPSINQ96N21 525 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 PLIN2Q99541 437 aa20.61■□□□□ 0.89
COL9A3-205ENST00000466192 MEIS2O14770 477 aa20.6■□□□□ 0.89
COL9A3-205ENST00000466192 TPM2P07951 284 aa20.6■□□□□ 0.89
COL9A3-205ENST00000466192 TAL1P17542 331 aaPredicted RBP20.6■□□□□ 0.89
COL9A3-205ENST00000466192 FAM83BQ5T0W9 1011 aa20.6■□□□□ 0.89
COL9A3-205ENST00000466192 PPP4R3AQ6IN85 833 aa20.6■□□□□ 0.89
COL9A3-205ENST00000466192 GLIS2Q9BZE0 524 aaPredicted RBP20.6■□□□□ 0.89
COL9A3-205ENST00000466192 IMPACTQ9P2X3 320 aa20.6■□□□□ 0.89
COL9A3-205ENST00000466192 CNOT7Q9UIV1 285 aaKnown RBP20.6■□□□□ 0.89
COL9A3-205ENST00000466192 CD44P16070 742 aaKnown RBP20.59■□□□□ 0.89
COL9A3-205ENST00000466192 STAT2P52630 851 aa20.59■□□□□ 0.89
COL9A3-205ENST00000466192 TBC1D10BQ4KMP7 808 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-205ENST00000466192 CCDC84Q86UT8 332 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-205ENST00000466192 ENOX1Q8TC92 643 aaKnown RBP20.59■□□□□ 0.89
COL9A3-205ENST00000466192 PHF20L1A8MW92 1017 aa20.59■□□□□ 0.89
COL9A3-205ENST00000466192 KLHL10Q6JEL2 608 aa20.59■□□□□ 0.89
COL9A3-205ENST00000466192 SMYD4Q8IYR2 804 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-205ENST00000466192 P2RX7Q99572 595 aaKnown RBP20.59■□□□□ 0.89
COL9A3-205ENST00000466192 MMTAG2Q9BU76 263 aaKnown RBP20.59■□□□□ 0.89
COL9A3-205ENST00000466192 VCPKMTQ9H867 229 aa20.59■□□□□ 0.89
COL9A3-205ENST00000466192 SKILP12757 684 aa20.58■□□□□ 0.89
COL9A3-205ENST00000466192 FXR2P51116 673 aaKnown RBP eCLIP20.58■□□□□ 0.89
COL9A3-205ENST00000466192 GSDMDP57764 484 aa20.58■□□□□ 0.89
COL9A3-205ENST00000466192 ZYXQ15942 572 aaKnown RBP20.58■□□□□ 0.89
COL9A3-205ENST00000466192 ZNF541Q9H0D2 1346 aa20.58■□□□□ 0.88
COL9A3-205ENST00000466192 ASNSP08243 561 aa20.58■□□□□ 0.88
COL9A3-205ENST00000466192 PLCG1P19174 1290 aa20.58■□□□□ 0.88
COL9A3-205ENST00000466192 ERCC5P28715 1186 aaPredicted RBP20.58■□□□□ 0.88
COL9A3-205ENST00000466192 TNFAIP1Q13829 316 aa20.58■□□□□ 0.88
COL9A3-205ENST00000466192 ANO3Q9BYT9 981 aa20.58■□□□□ 0.88
COL9A3-205ENST00000466192 KBTBD4Q9NVX7 518 aa20.58■□□□□ 0.88
COL9A3-205ENST00000466192 DDX25Q9UHL0 483 aaKnown RBP20.58■□□□□ 0.88
COL9A3-205ENST00000466192 DICER1Q9UPY3 1922 aaKnown RBP20.57■□□□□ 0.88
COL9A3-205ENST00000466192 CBFA2T2O43439 604 aa20.57■□□□□ 0.88
COL9A3-205ENST00000466192 PPP1R3GB7ZBB8 358 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 OPLAHO14841 1288 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 CDK11BP21127 795 aaKnown RBP20.56■□□□□ 0.88
COL9A3-205ENST00000466192 CCZ1BP86790 482 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 CCZ1P86791 482 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-205ENST00000466192 HAS1Q92839 578 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 SAMSN1Q9NSI8 373 aaKnown RBP20.56■□□□□ 0.88
COL9A3-205ENST00000466192 HACL1Q9UJ83 578 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 RPN1P04843 607 aaKnown RBP20.56■□□□□ 0.88
COL9A3-205ENST00000466192 GCFC2P16383 781 aaKnown RBP20.56■□□□□ 0.88
COL9A3-205ENST00000466192 ZNF18P17022 549 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 AP3B2Q13367 1082 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 PTPN21Q16825 1174 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 CT47A1Q5JQC4 288 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-205ENST00000466192 SH2D4AQ9H788 454 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 LRWD1Q9UFC0 647 aa20.56■□□□□ 0.88
COL9A3-205ENST00000466192 STX17P56962 302 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 TMEM266Q2M3C6 531 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 KIF4BQ2VIQ3 1234 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 ARMCX5Q6P1M9 558 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 POTEMA6NI47 508 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 USP11P51784 963 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 CRYGNQ8WXF5 182 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 GJA10Q969M2 543 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 CUEDC2Q9H467 287 aa20.55■□□□□ 0.88
COL9A3-205ENST00000466192 SBF1O95248 1867 aa20.54■□□□□ 0.88
COL9A3-205ENST00000466192 PDIA5Q14554 519 aa20.54■□□□□ 0.88
COL9A3-205ENST00000466192 KIFC2Q96AC6 838 aa20.54■□□□□ 0.88
COL9A3-205ENST00000466192 DEFB129Q9H1M3 183 aa20.54■□□□□ 0.88
COL9A3-205ENST00000466192 SYNRGQ9UMZ2 1314 aa20.54■□□□□ 0.88
COL9A3-205ENST00000466192 TERF1P54274 439 aa20.53■□□□□ 0.88
COL9A3-205ENST00000466192 CHURC1Q8WUH1 139 aa20.53■□□□□ 0.88
COL9A3-205ENST00000466192 NAP1L4Q99733 375 aaKnown RBP20.53■□□□□ 0.88
COL9A3-205ENST00000466192 ZNF341Q9BYN7 854 aa20.53■□□□□ 0.88
COL9A3-205ENST00000466192 MAGEF1Q9HAY2 307 aa20.53■□□□□ 0.88
COL9A3-205ENST00000466192 INTS13Q9NVM9 706 aa20.53■□□□□ 0.88
COL9A3-205ENST00000466192 RMND1Q9NWS8 449 aa20.53■□□□□ 0.88
COL9A3-205ENST00000466192 KLRC4O43908 158 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms